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Age-related variations in the methylome associated with gene expression in human monocytes and T cells

Age-related variations in DNA methylation have been reported; however, the functional relevance of these differentially methylated sites (age-dMS) are unclear. Here we report potentially functional age-dMS, defined as age- and cis-gene expression-associated methylation sites (age-eMS), identified by...

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Autores principales: Reynolds, Lindsay M., Taylor, Jackson R., Ding, Jingzhong, Lohman, Kurt, Johnson, Craig, Siscovick, David, Burke, Gregory, Post, Wendy, Shea, Steven, Jacobs, David R., Stunnenberg, Hendrik, Kritchevsky, Stephen B., Hoeschele, Ina, McCall, Charles E., Herrington, David, Tracy, Russell P., Liu, Yongmei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4280798/
https://www.ncbi.nlm.nih.gov/pubmed/25404168
http://dx.doi.org/10.1038/ncomms6366
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author Reynolds, Lindsay M.
Taylor, Jackson R.
Ding, Jingzhong
Lohman, Kurt
Johnson, Craig
Siscovick, David
Burke, Gregory
Post, Wendy
Shea, Steven
Jacobs, David R.
Stunnenberg, Hendrik
Kritchevsky, Stephen B.
Hoeschele, Ina
McCall, Charles E.
Herrington, David
Tracy, Russell P.
Liu, Yongmei
author_facet Reynolds, Lindsay M.
Taylor, Jackson R.
Ding, Jingzhong
Lohman, Kurt
Johnson, Craig
Siscovick, David
Burke, Gregory
Post, Wendy
Shea, Steven
Jacobs, David R.
Stunnenberg, Hendrik
Kritchevsky, Stephen B.
Hoeschele, Ina
McCall, Charles E.
Herrington, David
Tracy, Russell P.
Liu, Yongmei
author_sort Reynolds, Lindsay M.
collection PubMed
description Age-related variations in DNA methylation have been reported; however, the functional relevance of these differentially methylated sites (age-dMS) are unclear. Here we report potentially functional age-dMS, defined as age- and cis-gene expression-associated methylation sites (age-eMS), identified by integrating genome-wide CpG methylation and gene expression profiles collected ex vivo from circulating T cells (227 CD4+ samples) and monocytes (1,264 CD14+ samples, age range: 55–94 years). None of the age-eMS detected in 227 T cell samples are detectable in 1,264 monocyte samples, in contrast to the majority of age-dMS detected in T cells that replicated in monocytes. Age-eMS tend to be hypomethylated with older age, located in predicted enhancers, and preferentially linked to expression of antigen processing and presentation genes. These results identify and characterize potentially functional age-related methylation in human T cells and monocytes, and provide novel insights into the role age-dMS may play in the aging process.
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spelling pubmed-42807982015-05-18 Age-related variations in the methylome associated with gene expression in human monocytes and T cells Reynolds, Lindsay M. Taylor, Jackson R. Ding, Jingzhong Lohman, Kurt Johnson, Craig Siscovick, David Burke, Gregory Post, Wendy Shea, Steven Jacobs, David R. Stunnenberg, Hendrik Kritchevsky, Stephen B. Hoeschele, Ina McCall, Charles E. Herrington, David Tracy, Russell P. Liu, Yongmei Nat Commun Article Age-related variations in DNA methylation have been reported; however, the functional relevance of these differentially methylated sites (age-dMS) are unclear. Here we report potentially functional age-dMS, defined as age- and cis-gene expression-associated methylation sites (age-eMS), identified by integrating genome-wide CpG methylation and gene expression profiles collected ex vivo from circulating T cells (227 CD4+ samples) and monocytes (1,264 CD14+ samples, age range: 55–94 years). None of the age-eMS detected in 227 T cell samples are detectable in 1,264 monocyte samples, in contrast to the majority of age-dMS detected in T cells that replicated in monocytes. Age-eMS tend to be hypomethylated with older age, located in predicted enhancers, and preferentially linked to expression of antigen processing and presentation genes. These results identify and characterize potentially functional age-related methylation in human T cells and monocytes, and provide novel insights into the role age-dMS may play in the aging process. 2014-11-18 /pmc/articles/PMC4280798/ /pubmed/25404168 http://dx.doi.org/10.1038/ncomms6366 Text en http://www.nature.com/authors/editorial_policies/license.html#terms Users may view, print, copy, and download text and data-mine the content in such documents, for the purposes of academic research, subject always to the full Conditions of use:http://www.nature.com/authors/editorial_policies/license.html#terms
spellingShingle Article
Reynolds, Lindsay M.
Taylor, Jackson R.
Ding, Jingzhong
Lohman, Kurt
Johnson, Craig
Siscovick, David
Burke, Gregory
Post, Wendy
Shea, Steven
Jacobs, David R.
Stunnenberg, Hendrik
Kritchevsky, Stephen B.
Hoeschele, Ina
McCall, Charles E.
Herrington, David
Tracy, Russell P.
Liu, Yongmei
Age-related variations in the methylome associated with gene expression in human monocytes and T cells
title Age-related variations in the methylome associated with gene expression in human monocytes and T cells
title_full Age-related variations in the methylome associated with gene expression in human monocytes and T cells
title_fullStr Age-related variations in the methylome associated with gene expression in human monocytes and T cells
title_full_unstemmed Age-related variations in the methylome associated with gene expression in human monocytes and T cells
title_short Age-related variations in the methylome associated with gene expression in human monocytes and T cells
title_sort age-related variations in the methylome associated with gene expression in human monocytes and t cells
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4280798/
https://www.ncbi.nlm.nih.gov/pubmed/25404168
http://dx.doi.org/10.1038/ncomms6366
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