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Genetic and Clinical Analysis of ABCA4-Associated Disease in African American Patients

Autosomal recessive Stargardt disease (STGD1) is caused by hundreds of mutations in the ABCA4 gene, which are often specific to racial and ethnic groups. Here, we investigated the ABCA4 variation and their phenotypic expression in a cohort of 44 patients of African American descent, a previously und...

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Autores principales: Zernant, Jana, Collison, Frederick T, Lee, Winston, Fishman, Gerald A, Noupuu, Kalev, Yuan, Bo, Cai, Carolyn, Lupski, James R, Yannuzzi, Lawrence A, Tsang, Stephen H, Allikmets, Rando
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BlackWell Publishing Ltd 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4283973/
https://www.ncbi.nlm.nih.gov/pubmed/25066811
http://dx.doi.org/10.1002/humu.22626
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author Zernant, Jana
Collison, Frederick T
Lee, Winston
Fishman, Gerald A
Noupuu, Kalev
Yuan, Bo
Cai, Carolyn
Lupski, James R
Yannuzzi, Lawrence A
Tsang, Stephen H
Allikmets, Rando
author_facet Zernant, Jana
Collison, Frederick T
Lee, Winston
Fishman, Gerald A
Noupuu, Kalev
Yuan, Bo
Cai, Carolyn
Lupski, James R
Yannuzzi, Lawrence A
Tsang, Stephen H
Allikmets, Rando
author_sort Zernant, Jana
collection PubMed
description Autosomal recessive Stargardt disease (STGD1) is caused by hundreds of mutations in the ABCA4 gene, which are often specific to racial and ethnic groups. Here, we investigated the ABCA4 variation and their phenotypic expression in a cohort of 44 patients of African American descent, a previously under-characterized racial group. Patients were screened for mutations in ABCA4 by next-generation sequencing and array-comparative genomic hybridization (aCGH), followed by analyses for pathogenicity by in silico programs. Thorough ophthalmic examination was performed on all patients. At least two (expected) disease-causing alleles in the ABCA4 gene were identified in 27 (61.4%) patients, one allele in 11 (25%) patients, and no ABCA4 mutations were found in six (13.6%) patients. Altogether, 39 different disease-causing ABCA4 variants, including seven new, were identified on 65 (74%) chromosomes, most of which were unique for this racial group. The most frequent ABCA4 mutation in this cohort was c.6320G>A (p.(R2107H)), representing 19.3% of all disease-associated alleles. No large copy number variants were identified in any patient. Most patients reported later onset of symptoms. In summary, the ABCA4 mutation spectrum in patients of West African descent differs significantly from that in patients of European descent, resulting in a later onset and “milder” disease.
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spelling pubmed-42839732015-01-14 Genetic and Clinical Analysis of ABCA4-Associated Disease in African American Patients Zernant, Jana Collison, Frederick T Lee, Winston Fishman, Gerald A Noupuu, Kalev Yuan, Bo Cai, Carolyn Lupski, James R Yannuzzi, Lawrence A Tsang, Stephen H Allikmets, Rando Hum Mutat Research Articles Autosomal recessive Stargardt disease (STGD1) is caused by hundreds of mutations in the ABCA4 gene, which are often specific to racial and ethnic groups. Here, we investigated the ABCA4 variation and their phenotypic expression in a cohort of 44 patients of African American descent, a previously under-characterized racial group. Patients were screened for mutations in ABCA4 by next-generation sequencing and array-comparative genomic hybridization (aCGH), followed by analyses for pathogenicity by in silico programs. Thorough ophthalmic examination was performed on all patients. At least two (expected) disease-causing alleles in the ABCA4 gene were identified in 27 (61.4%) patients, one allele in 11 (25%) patients, and no ABCA4 mutations were found in six (13.6%) patients. Altogether, 39 different disease-causing ABCA4 variants, including seven new, were identified on 65 (74%) chromosomes, most of which were unique for this racial group. The most frequent ABCA4 mutation in this cohort was c.6320G>A (p.(R2107H)), representing 19.3% of all disease-associated alleles. No large copy number variants were identified in any patient. Most patients reported later onset of symptoms. In summary, the ABCA4 mutation spectrum in patients of West African descent differs significantly from that in patients of European descent, resulting in a later onset and “milder” disease. BlackWell Publishing Ltd 2014-10 2014-07-27 /pmc/articles/PMC4283973/ /pubmed/25066811 http://dx.doi.org/10.1002/humu.22626 Text en © 2014 The Authors. **Human Mutation published by Wiley Periodicals, Inc. http://creativecommons.org/licenses/by-nc-nd/3.0/ This is an open access article under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non-commercial and no modifications or adaptations are made.
spellingShingle Research Articles
Zernant, Jana
Collison, Frederick T
Lee, Winston
Fishman, Gerald A
Noupuu, Kalev
Yuan, Bo
Cai, Carolyn
Lupski, James R
Yannuzzi, Lawrence A
Tsang, Stephen H
Allikmets, Rando
Genetic and Clinical Analysis of ABCA4-Associated Disease in African American Patients
title Genetic and Clinical Analysis of ABCA4-Associated Disease in African American Patients
title_full Genetic and Clinical Analysis of ABCA4-Associated Disease in African American Patients
title_fullStr Genetic and Clinical Analysis of ABCA4-Associated Disease in African American Patients
title_full_unstemmed Genetic and Clinical Analysis of ABCA4-Associated Disease in African American Patients
title_short Genetic and Clinical Analysis of ABCA4-Associated Disease in African American Patients
title_sort genetic and clinical analysis of abca4-associated disease in african american patients
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4283973/
https://www.ncbi.nlm.nih.gov/pubmed/25066811
http://dx.doi.org/10.1002/humu.22626
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