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Transcriptome Sequencing in a Tibetan Barley Landrace with High Resistance to Powdery Mildew
Hulless barley is an important cereal crop worldwide, especially in Tibet of China. However, this crop is usually susceptible to powdery mildew caused by Blumeria graminis f. sp. hordei. In this study, we aimed to understand the functions and pathways of genes involved in the disease resistance by t...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Hindawi Publishing Corporation
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4284937/ https://www.ncbi.nlm.nih.gov/pubmed/25587568 http://dx.doi.org/10.1155/2014/594579 |
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author | Zeng, Xing-Quan Luo, Xiao-Mei Wang, Yu-Lin Xu, Qi-Jun Bai, Li-Jun Yuan, Hong-Jun Tashi, Nyima |
author_facet | Zeng, Xing-Quan Luo, Xiao-Mei Wang, Yu-Lin Xu, Qi-Jun Bai, Li-Jun Yuan, Hong-Jun Tashi, Nyima |
author_sort | Zeng, Xing-Quan |
collection | PubMed |
description | Hulless barley is an important cereal crop worldwide, especially in Tibet of China. However, this crop is usually susceptible to powdery mildew caused by Blumeria graminis f. sp. hordei. In this study, we aimed to understand the functions and pathways of genes involved in the disease resistance by transcriptome sequencing of a Tibetan barley landrace with high resistance to powdery mildew. A total of 831 significant differentially expressed genes were found in the infected seedlings, covering 19 functions. Either “cell,” “cell part,” and “extracellular region” in the cellular component category or “binding” and “catalytic” in the category of molecular function as well as “metabolic process” and “cellular process” in the biological process category together demonstrated that these functions may be involved in the resistance to powdery mildew of the hulless barley. In addition, 330 KEGG pathways were found using BLASTx with an E-value cut-off of <10(−5). Among them, three pathways, namely, “photosynthesis,” “plant-pathogen interaction,” and “photosynthesis-antenna proteins” had significant matches in the database. Significant expressions of the three pathways were detected at 24 h, 48 h, and 96 h after infection, respectively. These results indicated a complex process of barley response to powdery mildew infection. |
format | Online Article Text |
id | pubmed-4284937 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Hindawi Publishing Corporation |
record_format | MEDLINE/PubMed |
spelling | pubmed-42849372015-01-13 Transcriptome Sequencing in a Tibetan Barley Landrace with High Resistance to Powdery Mildew Zeng, Xing-Quan Luo, Xiao-Mei Wang, Yu-Lin Xu, Qi-Jun Bai, Li-Jun Yuan, Hong-Jun Tashi, Nyima ScientificWorldJournal Research Article Hulless barley is an important cereal crop worldwide, especially in Tibet of China. However, this crop is usually susceptible to powdery mildew caused by Blumeria graminis f. sp. hordei. In this study, we aimed to understand the functions and pathways of genes involved in the disease resistance by transcriptome sequencing of a Tibetan barley landrace with high resistance to powdery mildew. A total of 831 significant differentially expressed genes were found in the infected seedlings, covering 19 functions. Either “cell,” “cell part,” and “extracellular region” in the cellular component category or “binding” and “catalytic” in the category of molecular function as well as “metabolic process” and “cellular process” in the biological process category together demonstrated that these functions may be involved in the resistance to powdery mildew of the hulless barley. In addition, 330 KEGG pathways were found using BLASTx with an E-value cut-off of <10(−5). Among them, three pathways, namely, “photosynthesis,” “plant-pathogen interaction,” and “photosynthesis-antenna proteins” had significant matches in the database. Significant expressions of the three pathways were detected at 24 h, 48 h, and 96 h after infection, respectively. These results indicated a complex process of barley response to powdery mildew infection. Hindawi Publishing Corporation 2014 2014-12-22 /pmc/articles/PMC4284937/ /pubmed/25587568 http://dx.doi.org/10.1155/2014/594579 Text en Copyright © 2014 Xing-Quan Zeng et al. https://creativecommons.org/licenses/by/3.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article Zeng, Xing-Quan Luo, Xiao-Mei Wang, Yu-Lin Xu, Qi-Jun Bai, Li-Jun Yuan, Hong-Jun Tashi, Nyima Transcriptome Sequencing in a Tibetan Barley Landrace with High Resistance to Powdery Mildew |
title | Transcriptome Sequencing in a Tibetan Barley Landrace with High Resistance to Powdery Mildew |
title_full | Transcriptome Sequencing in a Tibetan Barley Landrace with High Resistance to Powdery Mildew |
title_fullStr | Transcriptome Sequencing in a Tibetan Barley Landrace with High Resistance to Powdery Mildew |
title_full_unstemmed | Transcriptome Sequencing in a Tibetan Barley Landrace with High Resistance to Powdery Mildew |
title_short | Transcriptome Sequencing in a Tibetan Barley Landrace with High Resistance to Powdery Mildew |
title_sort | transcriptome sequencing in a tibetan barley landrace with high resistance to powdery mildew |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4284937/ https://www.ncbi.nlm.nih.gov/pubmed/25587568 http://dx.doi.org/10.1155/2014/594579 |
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