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Transcriptome Sequencing in a Tibetan Barley Landrace with High Resistance to Powdery Mildew

Hulless barley is an important cereal crop worldwide, especially in Tibet of China. However, this crop is usually susceptible to powdery mildew caused by Blumeria graminis f. sp. hordei. In this study, we aimed to understand the functions and pathways of genes involved in the disease resistance by t...

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Autores principales: Zeng, Xing-Quan, Luo, Xiao-Mei, Wang, Yu-Lin, Xu, Qi-Jun, Bai, Li-Jun, Yuan, Hong-Jun, Tashi, Nyima
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi Publishing Corporation 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4284937/
https://www.ncbi.nlm.nih.gov/pubmed/25587568
http://dx.doi.org/10.1155/2014/594579
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author Zeng, Xing-Quan
Luo, Xiao-Mei
Wang, Yu-Lin
Xu, Qi-Jun
Bai, Li-Jun
Yuan, Hong-Jun
Tashi, Nyima
author_facet Zeng, Xing-Quan
Luo, Xiao-Mei
Wang, Yu-Lin
Xu, Qi-Jun
Bai, Li-Jun
Yuan, Hong-Jun
Tashi, Nyima
author_sort Zeng, Xing-Quan
collection PubMed
description Hulless barley is an important cereal crop worldwide, especially in Tibet of China. However, this crop is usually susceptible to powdery mildew caused by Blumeria graminis f. sp. hordei. In this study, we aimed to understand the functions and pathways of genes involved in the disease resistance by transcriptome sequencing of a Tibetan barley landrace with high resistance to powdery mildew. A total of 831 significant differentially expressed genes were found in the infected seedlings, covering 19 functions. Either “cell,” “cell part,” and “extracellular region” in the cellular component category or “binding” and “catalytic” in the category of molecular function as well as “metabolic process” and “cellular process” in the biological process category together demonstrated that these functions may be involved in the resistance to powdery mildew of the hulless barley. In addition, 330 KEGG pathways were found using BLASTx with an E-value cut-off of <10(−5). Among them, three pathways, namely, “photosynthesis,” “plant-pathogen interaction,” and “photosynthesis-antenna proteins” had significant matches in the database. Significant expressions of the three pathways were detected at 24 h, 48 h, and 96 h after infection, respectively. These results indicated a complex process of barley response to powdery mildew infection.
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spelling pubmed-42849372015-01-13 Transcriptome Sequencing in a Tibetan Barley Landrace with High Resistance to Powdery Mildew Zeng, Xing-Quan Luo, Xiao-Mei Wang, Yu-Lin Xu, Qi-Jun Bai, Li-Jun Yuan, Hong-Jun Tashi, Nyima ScientificWorldJournal Research Article Hulless barley is an important cereal crop worldwide, especially in Tibet of China. However, this crop is usually susceptible to powdery mildew caused by Blumeria graminis f. sp. hordei. In this study, we aimed to understand the functions and pathways of genes involved in the disease resistance by transcriptome sequencing of a Tibetan barley landrace with high resistance to powdery mildew. A total of 831 significant differentially expressed genes were found in the infected seedlings, covering 19 functions. Either “cell,” “cell part,” and “extracellular region” in the cellular component category or “binding” and “catalytic” in the category of molecular function as well as “metabolic process” and “cellular process” in the biological process category together demonstrated that these functions may be involved in the resistance to powdery mildew of the hulless barley. In addition, 330 KEGG pathways were found using BLASTx with an E-value cut-off of <10(−5). Among them, three pathways, namely, “photosynthesis,” “plant-pathogen interaction,” and “photosynthesis-antenna proteins” had significant matches in the database. Significant expressions of the three pathways were detected at 24 h, 48 h, and 96 h after infection, respectively. These results indicated a complex process of barley response to powdery mildew infection. Hindawi Publishing Corporation 2014 2014-12-22 /pmc/articles/PMC4284937/ /pubmed/25587568 http://dx.doi.org/10.1155/2014/594579 Text en Copyright © 2014 Xing-Quan Zeng et al. https://creativecommons.org/licenses/by/3.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Zeng, Xing-Quan
Luo, Xiao-Mei
Wang, Yu-Lin
Xu, Qi-Jun
Bai, Li-Jun
Yuan, Hong-Jun
Tashi, Nyima
Transcriptome Sequencing in a Tibetan Barley Landrace with High Resistance to Powdery Mildew
title Transcriptome Sequencing in a Tibetan Barley Landrace with High Resistance to Powdery Mildew
title_full Transcriptome Sequencing in a Tibetan Barley Landrace with High Resistance to Powdery Mildew
title_fullStr Transcriptome Sequencing in a Tibetan Barley Landrace with High Resistance to Powdery Mildew
title_full_unstemmed Transcriptome Sequencing in a Tibetan Barley Landrace with High Resistance to Powdery Mildew
title_short Transcriptome Sequencing in a Tibetan Barley Landrace with High Resistance to Powdery Mildew
title_sort transcriptome sequencing in a tibetan barley landrace with high resistance to powdery mildew
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4284937/
https://www.ncbi.nlm.nih.gov/pubmed/25587568
http://dx.doi.org/10.1155/2014/594579
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