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Data to knowledge: how to get meaning from your result
Structural and functional studies require the development of sophisticated ‘Big Data’ technologies and software to increase the knowledge derived and ensure reproducibility of the data. This paper presents summaries of the Structural Biology Knowledge Base, the VIPERdb Virus Structure Database, eval...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4285880/ https://www.ncbi.nlm.nih.gov/pubmed/25610627 http://dx.doi.org/10.1107/S2052252514023306 |
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author | Berman, Helen M. Gabanyi, Margaret J. Groom, Colin R. Johnson, John E. Murshudov, Garib N. Nicholls, Robert A. Reddy, Vijay Schwede, Torsten Zimmerman, Matthew D. Westbrook, John Minor, Wladek |
author_facet | Berman, Helen M. Gabanyi, Margaret J. Groom, Colin R. Johnson, John E. Murshudov, Garib N. Nicholls, Robert A. Reddy, Vijay Schwede, Torsten Zimmerman, Matthew D. Westbrook, John Minor, Wladek |
author_sort | Berman, Helen M. |
collection | PubMed |
description | Structural and functional studies require the development of sophisticated ‘Big Data’ technologies and software to increase the knowledge derived and ensure reproducibility of the data. This paper presents summaries of the Structural Biology Knowledge Base, the VIPERdb Virus Structure Database, evaluation of homology modeling by the Protein Model Portal, the ProSMART tool for conformation-independent structure comparison, the LabDB ‘super’ laboratory information management system and the Cambridge Structural Database. These techniques and technologies represent important tools for the transformation of crystallographic data into knowledge and information, in an effort to address the problem of non-reproducibility of experimental results. |
format | Online Article Text |
id | pubmed-4285880 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-42858802015-01-21 Data to knowledge: how to get meaning from your result Berman, Helen M. Gabanyi, Margaret J. Groom, Colin R. Johnson, John E. Murshudov, Garib N. Nicholls, Robert A. Reddy, Vijay Schwede, Torsten Zimmerman, Matthew D. Westbrook, John Minor, Wladek IUCrJ Feature Articles Structural and functional studies require the development of sophisticated ‘Big Data’ technologies and software to increase the knowledge derived and ensure reproducibility of the data. This paper presents summaries of the Structural Biology Knowledge Base, the VIPERdb Virus Structure Database, evaluation of homology modeling by the Protein Model Portal, the ProSMART tool for conformation-independent structure comparison, the LabDB ‘super’ laboratory information management system and the Cambridge Structural Database. These techniques and technologies represent important tools for the transformation of crystallographic data into knowledge and information, in an effort to address the problem of non-reproducibility of experimental results. International Union of Crystallography 2015-01-01 /pmc/articles/PMC4285880/ /pubmed/25610627 http://dx.doi.org/10.1107/S2052252514023306 Text en © Helen M. Berman et al. 2015 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited. |
spellingShingle | Feature Articles Berman, Helen M. Gabanyi, Margaret J. Groom, Colin R. Johnson, John E. Murshudov, Garib N. Nicholls, Robert A. Reddy, Vijay Schwede, Torsten Zimmerman, Matthew D. Westbrook, John Minor, Wladek Data to knowledge: how to get meaning from your result |
title | Data to knowledge: how to get meaning from your result |
title_full | Data to knowledge: how to get meaning from your result |
title_fullStr | Data to knowledge: how to get meaning from your result |
title_full_unstemmed | Data to knowledge: how to get meaning from your result |
title_short | Data to knowledge: how to get meaning from your result |
title_sort | data to knowledge: how to get meaning from your result |
topic | Feature Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4285880/ https://www.ncbi.nlm.nih.gov/pubmed/25610627 http://dx.doi.org/10.1107/S2052252514023306 |
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