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Data to knowledge: how to get meaning from your result

Structural and functional studies require the development of sophisticated ‘Big Data’ technologies and software to increase the knowledge derived and ensure reproducibility of the data. This paper presents summaries of the Structural Biology Knowledge Base, the VIPERdb Virus Structure Database, eval...

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Autores principales: Berman, Helen M., Gabanyi, Margaret J., Groom, Colin R., Johnson, John E., Murshudov, Garib N., Nicholls, Robert A., Reddy, Vijay, Schwede, Torsten, Zimmerman, Matthew D., Westbrook, John, Minor, Wladek
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4285880/
https://www.ncbi.nlm.nih.gov/pubmed/25610627
http://dx.doi.org/10.1107/S2052252514023306
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author Berman, Helen M.
Gabanyi, Margaret J.
Groom, Colin R.
Johnson, John E.
Murshudov, Garib N.
Nicholls, Robert A.
Reddy, Vijay
Schwede, Torsten
Zimmerman, Matthew D.
Westbrook, John
Minor, Wladek
author_facet Berman, Helen M.
Gabanyi, Margaret J.
Groom, Colin R.
Johnson, John E.
Murshudov, Garib N.
Nicholls, Robert A.
Reddy, Vijay
Schwede, Torsten
Zimmerman, Matthew D.
Westbrook, John
Minor, Wladek
author_sort Berman, Helen M.
collection PubMed
description Structural and functional studies require the development of sophisticated ‘Big Data’ technologies and software to increase the knowledge derived and ensure reproducibility of the data. This paper presents summaries of the Structural Biology Knowledge Base, the VIPERdb Virus Structure Database, evaluation of homology modeling by the Protein Model Portal, the ProSMART tool for conformation-independent structure comparison, the LabDB ‘super’ laboratory information management system and the Cambridge Structural Database. These techniques and technologies represent important tools for the transformation of crystallographic data into knowledge and information, in an effort to address the problem of non-reproducibility of experimental results.
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spelling pubmed-42858802015-01-21 Data to knowledge: how to get meaning from your result Berman, Helen M. Gabanyi, Margaret J. Groom, Colin R. Johnson, John E. Murshudov, Garib N. Nicholls, Robert A. Reddy, Vijay Schwede, Torsten Zimmerman, Matthew D. Westbrook, John Minor, Wladek IUCrJ Feature Articles Structural and functional studies require the development of sophisticated ‘Big Data’ technologies and software to increase the knowledge derived and ensure reproducibility of the data. This paper presents summaries of the Structural Biology Knowledge Base, the VIPERdb Virus Structure Database, evaluation of homology modeling by the Protein Model Portal, the ProSMART tool for conformation-independent structure comparison, the LabDB ‘super’ laboratory information management system and the Cambridge Structural Database. These techniques and technologies represent important tools for the transformation of crystallographic data into knowledge and information, in an effort to address the problem of non-reproducibility of experimental results. International Union of Crystallography 2015-01-01 /pmc/articles/PMC4285880/ /pubmed/25610627 http://dx.doi.org/10.1107/S2052252514023306 Text en © Helen M. Berman et al. 2015 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
spellingShingle Feature Articles
Berman, Helen M.
Gabanyi, Margaret J.
Groom, Colin R.
Johnson, John E.
Murshudov, Garib N.
Nicholls, Robert A.
Reddy, Vijay
Schwede, Torsten
Zimmerman, Matthew D.
Westbrook, John
Minor, Wladek
Data to knowledge: how to get meaning from your result
title Data to knowledge: how to get meaning from your result
title_full Data to knowledge: how to get meaning from your result
title_fullStr Data to knowledge: how to get meaning from your result
title_full_unstemmed Data to knowledge: how to get meaning from your result
title_short Data to knowledge: how to get meaning from your result
title_sort data to knowledge: how to get meaning from your result
topic Feature Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4285880/
https://www.ncbi.nlm.nih.gov/pubmed/25610627
http://dx.doi.org/10.1107/S2052252514023306
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