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DNA barcoding of Pentatomomorpha bugs (Hemiptera: Heteroptera) from Western Ghats of India
Recent studies from East Asia and Canadian National Collection of Insects have established the utility of DNA barcoding technique in identification of true bugs. The present study is an expansion of the database by adding mitochondrial cytochrome c oxidase I (mtCOI) sequences from forty three specie...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4287870/ https://www.ncbi.nlm.nih.gov/pubmed/25606457 http://dx.doi.org/10.1016/j.mgene.2014.09.006 |
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author | Tembe, Sanket Shouche, Yogesh Ghate, H.V. |
author_facet | Tembe, Sanket Shouche, Yogesh Ghate, H.V. |
author_sort | Tembe, Sanket |
collection | PubMed |
description | Recent studies from East Asia and Canadian National Collection of Insects have established the utility of DNA barcoding technique in identification of true bugs. The present study is an expansion of the database by adding mitochondrial cytochrome c oxidase I (mtCOI) sequences from forty three species of indigenous true bugs of India. mtCOI gene analysis of infraorder Pentatomomorpha covering a total of seventy three species that belong to five superfamilies; Pentatomoidea, Coreoidea, Pyrrhocoroidea, Lygaeoidea and Aradoidea revealed more than 3% interspecific distances in all the taxa studied except for two cases which showed barcode sharing. Less than 2% intra-specific divergence was observed in 97% of the taxa analysed and the average interspecies genetic distance was about 29 times higher than the average intraspecies genetic divergence. Distinct sequence divergence pattern at generic level and NJ clustering analysis suggests that COI barcode is an excellent molecular marker for species level identification of unknown taxa; however it may not be useful for resolving deep levels of divergence. Species identification even at nymphal stage could be achieved confirming the efficacy of this technique. |
format | Online Article Text |
id | pubmed-4287870 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-42878702015-01-20 DNA barcoding of Pentatomomorpha bugs (Hemiptera: Heteroptera) from Western Ghats of India Tembe, Sanket Shouche, Yogesh Ghate, H.V. Meta Gene Article Recent studies from East Asia and Canadian National Collection of Insects have established the utility of DNA barcoding technique in identification of true bugs. The present study is an expansion of the database by adding mitochondrial cytochrome c oxidase I (mtCOI) sequences from forty three species of indigenous true bugs of India. mtCOI gene analysis of infraorder Pentatomomorpha covering a total of seventy three species that belong to five superfamilies; Pentatomoidea, Coreoidea, Pyrrhocoroidea, Lygaeoidea and Aradoidea revealed more than 3% interspecific distances in all the taxa studied except for two cases which showed barcode sharing. Less than 2% intra-specific divergence was observed in 97% of the taxa analysed and the average interspecies genetic distance was about 29 times higher than the average intraspecies genetic divergence. Distinct sequence divergence pattern at generic level and NJ clustering analysis suggests that COI barcode is an excellent molecular marker for species level identification of unknown taxa; however it may not be useful for resolving deep levels of divergence. Species identification even at nymphal stage could be achieved confirming the efficacy of this technique. Elsevier 2014-10-10 /pmc/articles/PMC4287870/ /pubmed/25606457 http://dx.doi.org/10.1016/j.mgene.2014.09.006 Text en © 2014 The Authors http://creativecommons.org/licenses/by-nc-nd/3.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/3.0/). |
spellingShingle | Article Tembe, Sanket Shouche, Yogesh Ghate, H.V. DNA barcoding of Pentatomomorpha bugs (Hemiptera: Heteroptera) from Western Ghats of India |
title | DNA barcoding of Pentatomomorpha bugs (Hemiptera: Heteroptera) from Western Ghats of India |
title_full | DNA barcoding of Pentatomomorpha bugs (Hemiptera: Heteroptera) from Western Ghats of India |
title_fullStr | DNA barcoding of Pentatomomorpha bugs (Hemiptera: Heteroptera) from Western Ghats of India |
title_full_unstemmed | DNA barcoding of Pentatomomorpha bugs (Hemiptera: Heteroptera) from Western Ghats of India |
title_short | DNA barcoding of Pentatomomorpha bugs (Hemiptera: Heteroptera) from Western Ghats of India |
title_sort | dna barcoding of pentatomomorpha bugs (hemiptera: heteroptera) from western ghats of india |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4287870/ https://www.ncbi.nlm.nih.gov/pubmed/25606457 http://dx.doi.org/10.1016/j.mgene.2014.09.006 |
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