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MaxSSmap: a GPU program for mapping divergent short reads to genomes with the maximum scoring subsequence
BACKGROUND: Programs based on hash tables and Burrows-Wheeler are very fast for mapping short reads to genomes but have low accuracy in the presence of mismatches and gaps. Such reads can be aligned accurately with the Smith-Waterman algorithm but it can take hours and days to map millions of reads...
| Autores principales: | , |
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| Formato: | Online Artículo Texto |
| Lenguaje: | English |
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BioMed Central
2014
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| Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4289234/ https://www.ncbi.nlm.nih.gov/pubmed/25398475 http://dx.doi.org/10.1186/1471-2164-15-969 |