Cargando…

The Yeast Nucleosome Atlas (YNA) database: an integrative gene mining platform for studying chromatin structure and its regulation in yeast

BACKGROUND: Histone modification and remodeling play crucial roles in regulating gene transcription. These post-translational modifications of histones function in a combinatorial fashion and can be recognized by specific histone-binding proteins, thus regulating gene transcription. Therefore, under...

Descripción completa

Detalles Bibliográficos
Autores principales:	Hung, Po-Cheng, Yang, Tzu-Hsien, Liaw, Hung-Jiun, Wu, Wei-Sheng
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2014
Materias:	Research
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4290617/ https://www.ncbi.nlm.nih.gov/pubmed/25522035 http://dx.doi.org/10.1186/1471-2164-15-S9-S5

Ejemplares similares

Interaction of Yna1 and Yna2 Is Required for Nuclear Accumulation and Transcriptional Activation of the Nitrate Assimilation Pathway in the Yeast Hansenula polymorpha
por: Silvestrini, Lucia, et al.
Publicado: (2015)

YHMI: a web tool to identify histone modifications and histone/chromatin regulators from a gene list in yeast
por: Wu, Wei-Sheng, et al.
Publicado: (2018)

Global nucleosome occupancy in yeast
por: Bernstein, Bradley E, et al.
Publicado: (2004)

Global nucleosome distribution and the regulation of transcription in yeast
por: Ercan, Sevinc, et al.
Publicado: (2004)

Natural Single-Nucleosome Epi-Polymorphisms in Yeast
por: Nagarajan, Muniyandi, et al.
Publicado: (2010)

Tension-dependent nucleosome remodeling at the pericentromere in yeast
por: Verdaasdonk, Jolien S., et al.
Publicado: (2012)

The yeast ISW1b ATP-dependent chromatin remodeler is critical for nucleosome spacing and dinucleosome resolution
por: Eriksson, Peter R., et al.
Publicado: (2021)

A unique nucleosome arrangement, maintained actively by chromatin remodelers facilitates transcription of yeast tRNA genes
por: Kumar, Yatendra, et al.
Publicado: (2013)

Nucleosome Free Regions in Yeast Promoters Result from Competitive Binding of Transcription Factors That Interact with Chromatin Modifiers
por: Ozonov, Evgeniy A., et al.
Publicado: (2013)

Asymmetric nucleosomes flank promoters in the budding yeast genome
por: Ramachandran, Srinivas, et al.
Publicado: (2015)

Biochemical Analysis of Dimethyl Suberimidate-crosslinked Yeast Nucleosomes
por: Ichiakwa, Yuichi, et al.
Publicado: (2018)

Zinc is Essential for the Copper Reductase Activity of Yeast Nucleosomes
por: Vogelauer, Maria, et al.
Publicado: (2023)

New insights into two distinct nucleosome distributions: comparison of cross-platform positioning datasets in the yeast genome
por: Feng, Jihua, et al.
Publicado: (2010)

Mechanosensitive channel YnaI has lipid-bound extended sensor paddles
por: Hu, Wenxin, et al.
Publicado: (2021)

Chromatin conformation of yeast centromeres
Publicado: (1984)

Ultrastructural organization of yeast chromatin
Publicado: (1982)

Stabilization of the promoter nucleosomes in nucleosome-free regions by the yeast Cyc8–Tup1 corepressor
por: Chen, Kaifu, et al.
Publicado: (2013)

Hmo1 Protein Affects the Nucleosome Structure and Supports the Nucleosome Reorganization Activity of Yeast FACT
por: Malinina, Daria K., et al.
Publicado: (2022)

The Impact of the Nucleosome Code on Protein-Coding Sequence Evolution in Yeast
por: Warnecke, Tobias, et al.
Publicado: (2008)

Design of synthetic yeast promoters via tuning of nucleosome architecture
por: Curran, Kathleen A., et al.
Publicado: (2014)

Transcriptional activation of yeast genes disrupts intragenic nucleosome phasing
por: Cui, Feng, et al.
Publicado: (2012)

A base pair resolution map of nucleosome positions in yeast
por: Brogaard, Kristin, et al.
Publicado: (2012)

Thermodynamic modeling of genome-wide nucleosome depleted regions in yeast
por: Kharerin, Hungyo, et al.
Publicado: (2021)

Effective dynamics of nucleosome configurations at the yeast PHO5 promoter
por: Wolff, Michael Roland, et al.
Publicado: (2021)

Heterogeneous non-canonical nucleosomes predominate in yeast cells in situ
por: Tan, Zhi Yang, et al.
Publicado: (2023)

The Structure of YnaI Implies Structural and Mechanistic Conservation in the MscS Family of Mechanosensitive Channels
por: Böttcher, Bettina, et al.
Publicado: (2015)

A new experimental platform facilitates assessment of the transcriptional and chromatin landscapes of aging yeast
por: Hendrickson, David G, et al.
Publicado: (2018)

MYBS: a comprehensive web server for mining transcription factor binding sites in yeast
por: Tsai, Huai-Kuang, et al.
Publicado: (2007)

YCRD: Yeast Combinatorial Regulation Database
por: Wu, Wei-Sheng, et al.
Publicado: (2016)

Genetic Landscape of Open Chromatin in Yeast
por: Lee, Kibaick, et al.
Publicado: (2013)

Subtelomeric Chromatin in the Fission Yeast S. pombe
por: Yadav, Rajesh K., et al.
Publicado: (2021)

Large-scale data analysis for robotic yeast one-hybrid platforms and multi-disciplinary studies using GateMultiplex
por: Tsai, Ni-Chiao, et al.
Publicado: (2021)

DNA physical properties determine nucleosome occupancy from yeast to fly
por: Miele, Vincent, et al.
Publicado: (2008)

A Nucleosome-Guided Map of Transcription Factor Binding Sites in Yeast
por: Narlikar, Leelavati, et al.
Publicado: (2007)

Structure and Scm3-mediated assembly of budding yeast centromeric nucleosomes
por: Dechassa, Mekonnen Lemma, et al.
Publicado: (2011)

Widespread Compensatory Evolution Conserves DNA-Encoded Nucleosome Organization in Yeast
por: Kenigsberg, Ephraim, et al.
Publicado: (2010)

Nucleosome positions alone can be used to predict domains in yeast chromosomes
por: Wiese, Oliver, et al.
Publicado: (2019)

Changes in nucleosome formation at gene promoters in the archiascomycetous yeast Saitoella complicata
por: Nakamiya, Hikaru, et al.
Publicado: (2017)

Structure of the yeast Swi/Snf complex in a nucleosome free state
por: Wang, Chengcheng, et al.
Publicado: (2020)

Predicting nucleosome positioning using statistical equilibrium models in budding yeast
por: Kharerin, Hungyo, et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_5f08o20e5hjlcgml9lpvrb9g5q