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The neglected tool in the Bayesian ecologist's shed: a case study testing informative priors' effect on model accuracy

Despite benefits for precision, ecologists rarely use informative priors. One reason that ecologists may prefer vague priors is the perception that informative priors reduce accuracy. To date, no ecological study has empirically evaluated data-derived informative priors' effects on precision an...

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Autores principales: Morris, William K, Vesk, Peter A, McCarthy, Michael A, Bunyavejchewin, Sarayudh, Baker, Patrick J
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BlackWell Publishing Ltd 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4298437/
https://www.ncbi.nlm.nih.gov/pubmed/25628867
http://dx.doi.org/10.1002/ece3.1346
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author Morris, William K
Vesk, Peter A
McCarthy, Michael A
Bunyavejchewin, Sarayudh
Baker, Patrick J
author_facet Morris, William K
Vesk, Peter A
McCarthy, Michael A
Bunyavejchewin, Sarayudh
Baker, Patrick J
author_sort Morris, William K
collection PubMed
description Despite benefits for precision, ecologists rarely use informative priors. One reason that ecologists may prefer vague priors is the perception that informative priors reduce accuracy. To date, no ecological study has empirically evaluated data-derived informative priors' effects on precision and accuracy. To determine the impacts of priors, we evaluated mortality models for tree species using data from a forest dynamics plot in Thailand. Half the models used vague priors, and the remaining half had informative priors. We found precision was greater when using informative priors, but effects on accuracy were more variable. In some cases, prior information improved accuracy, while in others, it was reduced. On average, models with informative priors were no more or less accurate than models without. Our analyses provide a detailed case study on the simultaneous effect of prior information on precision and accuracy and demonstrate that when priors are specified appropriately, they lead to greater precision without systematically reducing model accuracy.
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spelling pubmed-42984372015-01-27 The neglected tool in the Bayesian ecologist's shed: a case study testing informative priors' effect on model accuracy Morris, William K Vesk, Peter A McCarthy, Michael A Bunyavejchewin, Sarayudh Baker, Patrick J Ecol Evol Original Research Despite benefits for precision, ecologists rarely use informative priors. One reason that ecologists may prefer vague priors is the perception that informative priors reduce accuracy. To date, no ecological study has empirically evaluated data-derived informative priors' effects on precision and accuracy. To determine the impacts of priors, we evaluated mortality models for tree species using data from a forest dynamics plot in Thailand. Half the models used vague priors, and the remaining half had informative priors. We found precision was greater when using informative priors, but effects on accuracy were more variable. In some cases, prior information improved accuracy, while in others, it was reduced. On average, models with informative priors were no more or less accurate than models without. Our analyses provide a detailed case study on the simultaneous effect of prior information on precision and accuracy and demonstrate that when priors are specified appropriately, they lead to greater precision without systematically reducing model accuracy. BlackWell Publishing Ltd 2015-01 2014-12-05 /pmc/articles/PMC4298437/ /pubmed/25628867 http://dx.doi.org/10.1002/ece3.1346 Text en © 2014 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd.
spellingShingle Original Research
Morris, William K
Vesk, Peter A
McCarthy, Michael A
Bunyavejchewin, Sarayudh
Baker, Patrick J
The neglected tool in the Bayesian ecologist's shed: a case study testing informative priors' effect on model accuracy
title The neglected tool in the Bayesian ecologist's shed: a case study testing informative priors' effect on model accuracy
title_full The neglected tool in the Bayesian ecologist's shed: a case study testing informative priors' effect on model accuracy
title_fullStr The neglected tool in the Bayesian ecologist's shed: a case study testing informative priors' effect on model accuracy
title_full_unstemmed The neglected tool in the Bayesian ecologist's shed: a case study testing informative priors' effect on model accuracy
title_short The neglected tool in the Bayesian ecologist's shed: a case study testing informative priors' effect on model accuracy
title_sort neglected tool in the bayesian ecologist's shed: a case study testing informative priors' effect on model accuracy
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4298437/
https://www.ncbi.nlm.nih.gov/pubmed/25628867
http://dx.doi.org/10.1002/ece3.1346
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