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The neglected tool in the Bayesian ecologist's shed: a case study testing informative priors' effect on model accuracy
Despite benefits for precision, ecologists rarely use informative priors. One reason that ecologists may prefer vague priors is the perception that informative priors reduce accuracy. To date, no ecological study has empirically evaluated data-derived informative priors' effects on precision an...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BlackWell Publishing Ltd
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4298437/ https://www.ncbi.nlm.nih.gov/pubmed/25628867 http://dx.doi.org/10.1002/ece3.1346 |
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author | Morris, William K Vesk, Peter A McCarthy, Michael A Bunyavejchewin, Sarayudh Baker, Patrick J |
author_facet | Morris, William K Vesk, Peter A McCarthy, Michael A Bunyavejchewin, Sarayudh Baker, Patrick J |
author_sort | Morris, William K |
collection | PubMed |
description | Despite benefits for precision, ecologists rarely use informative priors. One reason that ecologists may prefer vague priors is the perception that informative priors reduce accuracy. To date, no ecological study has empirically evaluated data-derived informative priors' effects on precision and accuracy. To determine the impacts of priors, we evaluated mortality models for tree species using data from a forest dynamics plot in Thailand. Half the models used vague priors, and the remaining half had informative priors. We found precision was greater when using informative priors, but effects on accuracy were more variable. In some cases, prior information improved accuracy, while in others, it was reduced. On average, models with informative priors were no more or less accurate than models without. Our analyses provide a detailed case study on the simultaneous effect of prior information on precision and accuracy and demonstrate that when priors are specified appropriately, they lead to greater precision without systematically reducing model accuracy. |
format | Online Article Text |
id | pubmed-4298437 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | BlackWell Publishing Ltd |
record_format | MEDLINE/PubMed |
spelling | pubmed-42984372015-01-27 The neglected tool in the Bayesian ecologist's shed: a case study testing informative priors' effect on model accuracy Morris, William K Vesk, Peter A McCarthy, Michael A Bunyavejchewin, Sarayudh Baker, Patrick J Ecol Evol Original Research Despite benefits for precision, ecologists rarely use informative priors. One reason that ecologists may prefer vague priors is the perception that informative priors reduce accuracy. To date, no ecological study has empirically evaluated data-derived informative priors' effects on precision and accuracy. To determine the impacts of priors, we evaluated mortality models for tree species using data from a forest dynamics plot in Thailand. Half the models used vague priors, and the remaining half had informative priors. We found precision was greater when using informative priors, but effects on accuracy were more variable. In some cases, prior information improved accuracy, while in others, it was reduced. On average, models with informative priors were no more or less accurate than models without. Our analyses provide a detailed case study on the simultaneous effect of prior information on precision and accuracy and demonstrate that when priors are specified appropriately, they lead to greater precision without systematically reducing model accuracy. BlackWell Publishing Ltd 2015-01 2014-12-05 /pmc/articles/PMC4298437/ /pubmed/25628867 http://dx.doi.org/10.1002/ece3.1346 Text en © 2014 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. |
spellingShingle | Original Research Morris, William K Vesk, Peter A McCarthy, Michael A Bunyavejchewin, Sarayudh Baker, Patrick J The neglected tool in the Bayesian ecologist's shed: a case study testing informative priors' effect on model accuracy |
title | The neglected tool in the Bayesian ecologist's shed: a case study testing informative priors' effect on model accuracy |
title_full | The neglected tool in the Bayesian ecologist's shed: a case study testing informative priors' effect on model accuracy |
title_fullStr | The neglected tool in the Bayesian ecologist's shed: a case study testing informative priors' effect on model accuracy |
title_full_unstemmed | The neglected tool in the Bayesian ecologist's shed: a case study testing informative priors' effect on model accuracy |
title_short | The neglected tool in the Bayesian ecologist's shed: a case study testing informative priors' effect on model accuracy |
title_sort | neglected tool in the bayesian ecologist's shed: a case study testing informative priors' effect on model accuracy |
topic | Original Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4298437/ https://www.ncbi.nlm.nih.gov/pubmed/25628867 http://dx.doi.org/10.1002/ece3.1346 |
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