Cargando…

Next-generation sequencing of flow-sorted wheat chromosome 5D reveals lineage-specific translocations and widespread gene duplications

BACKGROUND: The ~17 Gb hexaploid bread wheat genome is a high priority and a major technical challenge for genomic studies. In particular, the D sub-genome is relatively lacking in genetic diversity, making it both difficult to map genetically, and a target for introgression of agriculturally useful...

Descripción completa

Detalles Bibliográficos
Autores principales:	Lucas, Stuart J, Akpınar, Bala Anı, Šimková, Hana, Kubaláková, Marie, Doležel, Jaroslav, Budak, Hikmet
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2014
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4298962/ https://www.ncbi.nlm.nih.gov/pubmed/25487001 http://dx.doi.org/10.1186/1471-2164-15-1080

Ejemplares similares

The physical map of wheat chromosome 5DS revealed gene duplications and small rearrangements
por: Akpinar, Bala Ani, et al.
Publicado: (2015)

Molecular organization and comparative analysis of chromosome 5B of the wild wheat ancestor Triticum dicoccoides
por: Ani Akpinar, Bala, et al.
Publicado: (2015)

Chromosome Isolation by Flow Sorting in Aegilops umbellulata and Ae. comosa and Their Allotetraploid Hybrids Ae. biuncialis and Ae. geniculata
por: Molnár, István, et al.
Publicado: (2011)

Correction: Chromosome Isolation by Flow Sorting in Aegilops umbellulata and Ae. comosa and Their Allotetraploid Hybrids Ae. biuncialis and Ae. geniculata
por: Molnár, István, et al.
Publicado: (2011)

Chromosome‐based survey sequencing reveals the genome organization of wild wheat progenitor Triticum dicoccoides
por: Akpinar, Bala Ani, et al.
Publicado: (2018)

Physical Mapping Integrated with Syntenic Analysis to Characterize the Gene Space of the Long Arm of Wheat Chromosome 1A
por: Lucas, Stuart J., et al.
Publicado: (2013)

Chromosomes in the flow to simplify genome analysis
por: Doležel, Jaroslav, et al.
Publicado: (2012)

Multiple Variant Calling Pipelines in Wheat Whole Exome Sequencing
por: Cagirici, H. Busra, et al.
Publicado: (2021)

The utility of flow sorting to identify chromosomes carrying a single copy transgene in wheat
por: Cápal, Petr, et al.
Publicado: (2016)

Dissecting miRNAs in Wheat D Genome Progenitor, Aegilops tauschii
por: Akpinar, Bala A., et al.
Publicado: (2016)

Comparative Analysis of Coding and Non-Coding Features within Insect Tolerance Loci in Wheat with Their Homologs in Cereal Genomes
por: Muslu, Tugdem, et al.
Publicado: (2021)

The complete genome sequence of elite bread wheat cultivar, “Sonmez”
por: Akpinar, Bala Ani, et al.
Publicado: (2022)

Integration of mate pair sequences to improve shotgun assemblies of flow-sorted chromosome arms of hexaploid wheat
por: Belova, Tatiana, et al.
Publicado: (2013)

Wheat Long Noncoding RNAs from Organelle and Nuclear Genomes Carry Conserved microRNA Precursors Which May Together Comprise Intricate Networks in Insect Responses
por: Akpinar, Bala Ani, et al.
Publicado: (2023)

Sorting the Wheat from the Chaff: Identifying miRNAs in Genomic Survey Sequences of Triticum aestivum Chromosome 1AL
por: Lucas, Stuart J., et al.
Publicado: (2012)

First Survey of the Wheat Chromosome 5A Composition through a Next Generation Sequencing Approach
por: Vitulo, Nicola, et al.
Publicado: (2011)

Genomics Approaches for Crop Improvement against Abiotic Stress
por: Akpınar, Bala Anı, et al.
Publicado: (2013)

A novel resource for genomics of Triticeae: BAC library specific for the short arm of rye (Secale cereale L.) chromosome 1R (1RS)
por: Šimková, Hana, et al.
Publicado: (2008)

Next-Generation Survey Sequencing and the Molecular Organization of Wheat Chromosome 6B(¶)
por: Tanaka, Tsuyoshi, et al.
Publicado: (2014)

Chromosome arm-specific BAC end sequences permit comparative analysis of homoeologous chromosomes and genomes of polyploid wheat
por: Sehgal, Sunish K, et al.
Publicado: (2012)

Coupling amplified DNA from flow-sorted chromosomes to high-density SNP mapping in barley
por: Šimková, Hana, et al.
Publicado: (2008)

Intact DNA purified from flow-sorted nuclei unlocks the potential of next-generation genome mapping and assembly in Solanum species
por: Gaiero, Paola, et al.
Publicado: (2018)

Major haplotype divergence including multiple germin-like protein genes, at the wheat Sr2 adult plant stem rust resistance locus
por: Mago, Rohit, et al.
Publicado: (2014)

BAC Libraries from Wheat Chromosome 7D: Efficient Tool for Positional Cloning of Aphid Resistance Genes
por: Šimková, Hana, et al.
Publicado: (2011)

Unique and Conserved MicroRNAs in Wheat Chromosome 5D Revealed by Next-Generation Sequencing
por: Kurtoglu, Kuaybe Yucebilgili, et al.
Publicado: (2013)

Pan-Genome miRNomics in Brachypodium
por: Muslu, Tugdem, et al.
Publicado: (2021)

Chromosome analysis and sorting
por: Doležel, Jaroslav, et al.
Publicado: (2021)

Effect of phyB and phyC loss-of-function mutations on the wheat transcriptome under short and long day photoperiods
por: Kippes, Nestor, et al.
Publicado: (2020)

Sequence Composition and Gene Content of the Short Arm of Rye (Secale cereale) Chromosome 1
por: Fluch, Silvia, et al.
Publicado: (2012)

A large-scale multiomics analysis of wheat stem solidness and the wheat stem sawfly feeding response, and syntenic associations in barley, Brachypodium, and rice
por: Biyiklioglu, Sezgi, et al.
Publicado: (2018)

A Comprehensive Prescription for Plant miRNA Identification
por: Alptekin, Burcu, et al.
Publicado: (2017)

BioNano genome mapping of individual chromosomes supports physical mapping and sequence assembly in complex plant genomes
por: Staňková, Helena, et al.
Publicado: (2016)

One Major Challenge of Sequencing Large Plant Genomes Is to Know How Big They Really Are
por: Doležel, Jaroslav, et al.
Publicado: (2018)

Mitotic chromosome organization: General rules meet species-specific variability
por: Beseda, Tomáš, et al.
Publicado: (2020)

Inferring duplications, losses, transfers and incomplete lineage sorting with nonbinary species trees
por: Stolzer, Maureen, et al.
Publicado: (2012)

Widespread Discordance of Gene Trees with Species Tree in Drosophila: Evidence for Incomplete Lineage Sorting
por: Pollard, Daniel A, et al.
Publicado: (2006)

Whole-genome profiling and shotgun sequencing delivers an anchored, gene-decorated, physical map assembly of bread wheat chromosome 6A
por: Poursarebani, Naser, et al.
Publicado: (2014)

Sequencing flow-sorted short arm of Haynaldia villosa chromosome 4V provides insights into its molecular structure and virtual gene order
por: Xiao, Jin, et al.
Publicado: (2017)

Rapid gene isolation in barley and wheat by mutant chromosome sequencing
por: Sánchez-Martín, Javier, et al.
Publicado: (2016)

Features of the organization of bread wheat chromosome 5BS based on physical mapping
por: Salina, Elena A., et al.
Publicado: (2018)

Cannot write session to /tmp/vufind_sessions/sess_870irf86sikp4q2tvih21gfhcd