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Emergence of robust growth laws from optimal regulation of ribosome synthesis

Bacteria must constantly adapt their growth to changes in nutrient availability; yet despite large-scale changes in protein expression associated with sensing, adaptation, and processing different environmental nutrients, simple growth laws connect the ribosome abundance and the growth rate. Here, w...

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Detalles Bibliográficos
Autores principales: Scott, Matthew, Klumpp, Stefan, Mateescu, Eduard M, Hwa, Terence
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Blackwell Publishing Ltd 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4299513/
https://www.ncbi.nlm.nih.gov/pubmed/25149558
http://dx.doi.org/10.15252/msb.20145379
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author Scott, Matthew
Klumpp, Stefan
Mateescu, Eduard M
Hwa, Terence
author_facet Scott, Matthew
Klumpp, Stefan
Mateescu, Eduard M
Hwa, Terence
author_sort Scott, Matthew
collection PubMed
description Bacteria must constantly adapt their growth to changes in nutrient availability; yet despite large-scale changes in protein expression associated with sensing, adaptation, and processing different environmental nutrients, simple growth laws connect the ribosome abundance and the growth rate. Here, we investigate the origin of these growth laws by analyzing the features of ribosomal regulation that coordinate proteome-wide expression changes with cell growth in a variety of nutrient conditions in the model organism Escherichia coli. We identify supply-driven feedforward activation of ribosomal protein synthesis as the key regulatory motif maximizing amino acid flux, and autonomously guiding a cell to achieve optimal growth in different environments. The growth laws emerge naturally from the robust regulatory strategy underlying growth rate control, irrespective of the details of the molecular implementation. The study highlights the interplay between phenomenological modeling and molecular mechanisms in uncovering fundamental operating constraints, with implications for endogenous and synthetic design of microorganisms.
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spelling pubmed-42995132015-01-20 Emergence of robust growth laws from optimal regulation of ribosome synthesis Scott, Matthew Klumpp, Stefan Mateescu, Eduard M Hwa, Terence Mol Syst Biol Perspective Bacteria must constantly adapt their growth to changes in nutrient availability; yet despite large-scale changes in protein expression associated with sensing, adaptation, and processing different environmental nutrients, simple growth laws connect the ribosome abundance and the growth rate. Here, we investigate the origin of these growth laws by analyzing the features of ribosomal regulation that coordinate proteome-wide expression changes with cell growth in a variety of nutrient conditions in the model organism Escherichia coli. We identify supply-driven feedforward activation of ribosomal protein synthesis as the key regulatory motif maximizing amino acid flux, and autonomously guiding a cell to achieve optimal growth in different environments. The growth laws emerge naturally from the robust regulatory strategy underlying growth rate control, irrespective of the details of the molecular implementation. The study highlights the interplay between phenomenological modeling and molecular mechanisms in uncovering fundamental operating constraints, with implications for endogenous and synthetic design of microorganisms. Blackwell Publishing Ltd 2014-08-22 /pmc/articles/PMC4299513/ /pubmed/25149558 http://dx.doi.org/10.15252/msb.20145379 Text en © 2014 The Authors. Published under the terms of the CC BY 4.0 license http://creativecommons.org/licenses/by/4.0/ This is an open access article under the terms of the Creative Commons Attribution 4.0 License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Perspective
Scott, Matthew
Klumpp, Stefan
Mateescu, Eduard M
Hwa, Terence
Emergence of robust growth laws from optimal regulation of ribosome synthesis
title Emergence of robust growth laws from optimal regulation of ribosome synthesis
title_full Emergence of robust growth laws from optimal regulation of ribosome synthesis
title_fullStr Emergence of robust growth laws from optimal regulation of ribosome synthesis
title_full_unstemmed Emergence of robust growth laws from optimal regulation of ribosome synthesis
title_short Emergence of robust growth laws from optimal regulation of ribosome synthesis
title_sort emergence of robust growth laws from optimal regulation of ribosome synthesis
topic Perspective
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4299513/
https://www.ncbi.nlm.nih.gov/pubmed/25149558
http://dx.doi.org/10.15252/msb.20145379
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