HyDA-Vista: towards optimal guided selection of k-mer size for sequence assembly

MOTIVATION: Intimately tied to assembly quality is the complexity of the de Bruijn graph built by the assembler. Thus, there have been many paradigms developed to decrease the complexity of the de Bruijn graph. One obvious combinatorial paradigm for this is to allow the value of k to vary; having a...

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Detalles Bibliográficos
Autores principales: Shariat, Basir, Movahedi, Narjes Sadat, Chitsaz, Hamidreza, Boucher, Christina
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2014
Materias:
Research
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4304221/
https://www.ncbi.nlm.nih.gov/pubmed/25558875
http://dx.doi.org/10.1186/1471-2164-15-S10-S9

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