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Viewing multiple sequence alignments with the JavaScript Sequence Alignment Viewer (JSAV)

The JavaScript Sequence Alignment Viewer (JSAV) is designed as a simple-to-use JavaScript component for displaying sequence alignments on web pages. The display of sequences is highly configurable with options to allow alternative coloring schemes, sorting of sequences and ’dotifying’ repeated amino...

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Detalles Bibliográficos
Autor principal: Martin, Andrew C. R.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: F1000Research 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4304231/
https://www.ncbi.nlm.nih.gov/pubmed/25653836
http://dx.doi.org/10.12688/f1000research.5486.1
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author Martin, Andrew C. R.
author_facet Martin, Andrew C. R.
author_sort Martin, Andrew C. R.
collection PubMed
description The JavaScript Sequence Alignment Viewer (JSAV) is designed as a simple-to-use JavaScript component for displaying sequence alignments on web pages. The display of sequences is highly configurable with options to allow alternative coloring schemes, sorting of sequences and ’dotifying’ repeated amino acids. An option is also available to submit selected sequences to another web site, or to other JavaScript code. JSAV is implemented purely in JavaScript making use of the JQuery and JQuery-UI libraries. It does not use any HTML5-specific options to help with browser compatibility. The code is documented using JSDOC and is available from http://www.bioinf.org.uk/software/jsav/.
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spelling pubmed-43042312015-02-03 Viewing multiple sequence alignments with the JavaScript Sequence Alignment Viewer (JSAV) Martin, Andrew C. R. F1000Res Software Tool Article The JavaScript Sequence Alignment Viewer (JSAV) is designed as a simple-to-use JavaScript component for displaying sequence alignments on web pages. The display of sequences is highly configurable with options to allow alternative coloring schemes, sorting of sequences and ’dotifying’ repeated amino acids. An option is also available to submit selected sequences to another web site, or to other JavaScript code. JSAV is implemented purely in JavaScript making use of the JQuery and JQuery-UI libraries. It does not use any HTML5-specific options to help with browser compatibility. The code is documented using JSDOC and is available from http://www.bioinf.org.uk/software/jsav/. F1000Research 2014-10-23 /pmc/articles/PMC4304231/ /pubmed/25653836 http://dx.doi.org/10.12688/f1000research.5486.1 Text en Copyright: © 2014 Martin ACR http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. http://creativecommons.org/publicdomain/zero/1.0/ Data associated with the article are available under the terms of the Creative Commons Zero "No rights reserved" data waiver (CC0 1.0 Public domain dedication).
spellingShingle Software Tool Article
Martin, Andrew C. R.
Viewing multiple sequence alignments with the JavaScript Sequence Alignment Viewer (JSAV)
title Viewing multiple sequence alignments with the JavaScript Sequence Alignment Viewer (JSAV)
title_full Viewing multiple sequence alignments with the JavaScript Sequence Alignment Viewer (JSAV)
title_fullStr Viewing multiple sequence alignments with the JavaScript Sequence Alignment Viewer (JSAV)
title_full_unstemmed Viewing multiple sequence alignments with the JavaScript Sequence Alignment Viewer (JSAV)
title_short Viewing multiple sequence alignments with the JavaScript Sequence Alignment Viewer (JSAV)
title_sort viewing multiple sequence alignments with the javascript sequence alignment viewer (jsav)
topic Software Tool Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4304231/
https://www.ncbi.nlm.nih.gov/pubmed/25653836
http://dx.doi.org/10.12688/f1000research.5486.1
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