Cargando…
Viewing multiple sequence alignments with the JavaScript Sequence Alignment Viewer (JSAV)
The JavaScript Sequence Alignment Viewer (JSAV) is designed as a simple-to-use JavaScript component for displaying sequence alignments on web pages. The display of sequences is highly configurable with options to allow alternative coloring schemes, sorting of sequences and ’dotifying’ repeated amino...
Autor principal: | |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
F1000Research
2014
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4304231/ https://www.ncbi.nlm.nih.gov/pubmed/25653836 http://dx.doi.org/10.12688/f1000research.5486.1 |
_version_ | 1782354060774473728 |
---|---|
author | Martin, Andrew C. R. |
author_facet | Martin, Andrew C. R. |
author_sort | Martin, Andrew C. R. |
collection | PubMed |
description | The JavaScript Sequence Alignment Viewer (JSAV) is designed as a simple-to-use JavaScript component for displaying sequence alignments on web pages. The display of sequences is highly configurable with options to allow alternative coloring schemes, sorting of sequences and ’dotifying’ repeated amino acids. An option is also available to submit selected sequences to another web site, or to other JavaScript code. JSAV is implemented purely in JavaScript making use of the JQuery and JQuery-UI libraries. It does not use any HTML5-specific options to help with browser compatibility. The code is documented using JSDOC and is available from http://www.bioinf.org.uk/software/jsav/. |
format | Online Article Text |
id | pubmed-4304231 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | F1000Research |
record_format | MEDLINE/PubMed |
spelling | pubmed-43042312015-02-03 Viewing multiple sequence alignments with the JavaScript Sequence Alignment Viewer (JSAV) Martin, Andrew C. R. F1000Res Software Tool Article The JavaScript Sequence Alignment Viewer (JSAV) is designed as a simple-to-use JavaScript component for displaying sequence alignments on web pages. The display of sequences is highly configurable with options to allow alternative coloring schemes, sorting of sequences and ’dotifying’ repeated amino acids. An option is also available to submit selected sequences to another web site, or to other JavaScript code. JSAV is implemented purely in JavaScript making use of the JQuery and JQuery-UI libraries. It does not use any HTML5-specific options to help with browser compatibility. The code is documented using JSDOC and is available from http://www.bioinf.org.uk/software/jsav/. F1000Research 2014-10-23 /pmc/articles/PMC4304231/ /pubmed/25653836 http://dx.doi.org/10.12688/f1000research.5486.1 Text en Copyright: © 2014 Martin ACR http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. http://creativecommons.org/publicdomain/zero/1.0/ Data associated with the article are available under the terms of the Creative Commons Zero "No rights reserved" data waiver (CC0 1.0 Public domain dedication). |
spellingShingle | Software Tool Article Martin, Andrew C. R. Viewing multiple sequence alignments with the JavaScript Sequence Alignment Viewer (JSAV) |
title | Viewing multiple sequence alignments with the JavaScript Sequence Alignment Viewer (JSAV) |
title_full | Viewing multiple sequence alignments with the JavaScript Sequence Alignment Viewer (JSAV) |
title_fullStr | Viewing multiple sequence alignments with the JavaScript Sequence Alignment Viewer (JSAV) |
title_full_unstemmed | Viewing multiple sequence alignments with the JavaScript Sequence Alignment Viewer (JSAV) |
title_short | Viewing multiple sequence alignments with the JavaScript Sequence Alignment Viewer (JSAV) |
title_sort | viewing multiple sequence alignments with the javascript sequence alignment viewer (jsav) |
topic | Software Tool Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4304231/ https://www.ncbi.nlm.nih.gov/pubmed/25653836 http://dx.doi.org/10.12688/f1000research.5486.1 |
work_keys_str_mv | AT martinandrewcr viewingmultiplesequencealignmentswiththejavascriptsequencealignmentviewerjsav |