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Uniqueness of models from small-angle scattering data: the impact of a hydration shell and complementary NMR restraints

Small-angle scattering (SAS) has witnessed a breathtaking renaissance and expansion over the past 15 years regarding the determination of biomacromolecular structures in solution. While important issues such as sample quality, good experimental practice and guidelines for data analysis, interpretati...

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Autores principales: Kim, Henry S., Gabel, Frank
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4304686/
https://www.ncbi.nlm.nih.gov/pubmed/25615860
http://dx.doi.org/10.1107/S1399004714013923
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author Kim, Henry S.
Gabel, Frank
author_facet Kim, Henry S.
Gabel, Frank
author_sort Kim, Henry S.
collection PubMed
description Small-angle scattering (SAS) has witnessed a breathtaking renaissance and expansion over the past 15 years regarding the determination of biomacromolecular structures in solution. While important issues such as sample quality, good experimental practice and guidelines for data analysis, interpretation, presentation, publication and deposition are increasingly being recognized, crucial topics such as the uniqueness, precision and accuracy of the structural models obtained by SAS are still only poorly understood and addressed. The present article provides an overview of recent developments in these fields with a focus on the influence of complementary NMR restraints and of a hydration shell on the uniqueness of biomacromolecular models. As a first topic, the impact of incorporating NMR orientational restraints in addition to SAS distance restraints is discussed using a quantitative visual representation that illustrates how the possible conformational space of a two-body system is reduced as a function of the available data. As a second topic, the impact of a hydration shell on modelling parameters of a two-body system is illustrated, in particular on its inter-body distance. Finally, practical recommendations are provided to take both effects into account and promising future perspectives of SAS approaches are discussed.
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spelling pubmed-43046862015-01-30 Uniqueness of models from small-angle scattering data: the impact of a hydration shell and complementary NMR restraints Kim, Henry S. Gabel, Frank Acta Crystallogr D Biol Crystallogr Saxs Small-angle scattering (SAS) has witnessed a breathtaking renaissance and expansion over the past 15 years regarding the determination of biomacromolecular structures in solution. While important issues such as sample quality, good experimental practice and guidelines for data analysis, interpretation, presentation, publication and deposition are increasingly being recognized, crucial topics such as the uniqueness, precision and accuracy of the structural models obtained by SAS are still only poorly understood and addressed. The present article provides an overview of recent developments in these fields with a focus on the influence of complementary NMR restraints and of a hydration shell on the uniqueness of biomacromolecular models. As a first topic, the impact of incorporating NMR orientational restraints in addition to SAS distance restraints is discussed using a quantitative visual representation that illustrates how the possible conformational space of a two-body system is reduced as a function of the available data. As a second topic, the impact of a hydration shell on modelling parameters of a two-body system is illustrated, in particular on its inter-body distance. Finally, practical recommendations are provided to take both effects into account and promising future perspectives of SAS approaches are discussed. International Union of Crystallography 2015-01-01 /pmc/articles/PMC4304686/ /pubmed/25615860 http://dx.doi.org/10.1107/S1399004714013923 Text en © Kim & Gabel 2015 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
spellingShingle Saxs
Kim, Henry S.
Gabel, Frank
Uniqueness of models from small-angle scattering data: the impact of a hydration shell and complementary NMR restraints
title Uniqueness of models from small-angle scattering data: the impact of a hydration shell and complementary NMR restraints
title_full Uniqueness of models from small-angle scattering data: the impact of a hydration shell and complementary NMR restraints
title_fullStr Uniqueness of models from small-angle scattering data: the impact of a hydration shell and complementary NMR restraints
title_full_unstemmed Uniqueness of models from small-angle scattering data: the impact of a hydration shell and complementary NMR restraints
title_short Uniqueness of models from small-angle scattering data: the impact of a hydration shell and complementary NMR restraints
title_sort uniqueness of models from small-angle scattering data: the impact of a hydration shell and complementary nmr restraints
topic Saxs
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4304686/
https://www.ncbi.nlm.nih.gov/pubmed/25615860
http://dx.doi.org/10.1107/S1399004714013923
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