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ISPyB for BioSAXS, the gateway to user autonomy in solution scattering experiments

Logging experiments with the laboratory-information management system ISPyB (Information System for Protein crystallography Beamlines) enhances the automation of small-angle X-ray scattering of biological macromolecules in solution (BioSAXS) experiments. The ISPyB interface provides immediate user-o...

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Autores principales: De Maria Antolinos, Alejandro, Pernot, Petra, Brennich, Martha E., Kieffer, Jérôme, Bowler, Matthew W., Delageniere, Solange, Ohlsson, Staffan, Malbet Monaco, Stephanie, Ashton, Alun, Franke, Daniel, Svergun, Dmitri, McSweeney, Sean, Gordon, Elspeth, Round, Adam
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4304688/
https://www.ncbi.nlm.nih.gov/pubmed/25615862
http://dx.doi.org/10.1107/S1399004714019609
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author De Maria Antolinos, Alejandro
Pernot, Petra
Brennich, Martha E.
Kieffer, Jérôme
Bowler, Matthew W.
Delageniere, Solange
Ohlsson, Staffan
Malbet Monaco, Stephanie
Ashton, Alun
Franke, Daniel
Svergun, Dmitri
McSweeney, Sean
Gordon, Elspeth
Round, Adam
author_facet De Maria Antolinos, Alejandro
Pernot, Petra
Brennich, Martha E.
Kieffer, Jérôme
Bowler, Matthew W.
Delageniere, Solange
Ohlsson, Staffan
Malbet Monaco, Stephanie
Ashton, Alun
Franke, Daniel
Svergun, Dmitri
McSweeney, Sean
Gordon, Elspeth
Round, Adam
author_sort De Maria Antolinos, Alejandro
collection PubMed
description Logging experiments with the laboratory-information management system ISPyB (Information System for Protein crystallography Beamlines) enhances the automation of small-angle X-ray scattering of biological macromolecules in solution (BioSAXS) experiments. The ISPyB interface provides immediate user-oriented online feedback and enables data cross-checking and downstream analysis. To optimize data quality and completeness, ISPyBB (ISPyB for BioSAXS) makes it simple for users to compare the results from new measurements with previous acquisitions from the same day or earlier experiments in order to maximize the ability to collect all data required in a single synchrotron visit. The graphical user interface (GUI) of ISPyBB has been designed to guide users in the preparation of an experiment. The input of sample information and the ability to outline the experimental aims in advance provides feedback on the number of measurements required, calculation of expected sample volumes and time needed to collect the data: all of this information aids the users to better prepare for their trip to the synchrotron. A prototype version of the ISPyBB database is now available at the European Synchrotron Radiation Facility (ESRF) beamline BM29 and is already greatly appreciated by academic users and industrial clients. It will soon be available at the PETRA III beamline P12 and the Diamond Light Source beamlines I22 and B21.
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spelling pubmed-43046882015-01-30 ISPyB for BioSAXS, the gateway to user autonomy in solution scattering experiments De Maria Antolinos, Alejandro Pernot, Petra Brennich, Martha E. Kieffer, Jérôme Bowler, Matthew W. Delageniere, Solange Ohlsson, Staffan Malbet Monaco, Stephanie Ashton, Alun Franke, Daniel Svergun, Dmitri McSweeney, Sean Gordon, Elspeth Round, Adam Acta Crystallogr D Biol Crystallogr Saxs Logging experiments with the laboratory-information management system ISPyB (Information System for Protein crystallography Beamlines) enhances the automation of small-angle X-ray scattering of biological macromolecules in solution (BioSAXS) experiments. The ISPyB interface provides immediate user-oriented online feedback and enables data cross-checking and downstream analysis. To optimize data quality and completeness, ISPyBB (ISPyB for BioSAXS) makes it simple for users to compare the results from new measurements with previous acquisitions from the same day or earlier experiments in order to maximize the ability to collect all data required in a single synchrotron visit. The graphical user interface (GUI) of ISPyBB has been designed to guide users in the preparation of an experiment. The input of sample information and the ability to outline the experimental aims in advance provides feedback on the number of measurements required, calculation of expected sample volumes and time needed to collect the data: all of this information aids the users to better prepare for their trip to the synchrotron. A prototype version of the ISPyBB database is now available at the European Synchrotron Radiation Facility (ESRF) beamline BM29 and is already greatly appreciated by academic users and industrial clients. It will soon be available at the PETRA III beamline P12 and the Diamond Light Source beamlines I22 and B21. International Union of Crystallography 2015-01-01 /pmc/articles/PMC4304688/ /pubmed/25615862 http://dx.doi.org/10.1107/S1399004714019609 Text en © De Maria Antolinos et al. 2015 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
spellingShingle Saxs
De Maria Antolinos, Alejandro
Pernot, Petra
Brennich, Martha E.
Kieffer, Jérôme
Bowler, Matthew W.
Delageniere, Solange
Ohlsson, Staffan
Malbet Monaco, Stephanie
Ashton, Alun
Franke, Daniel
Svergun, Dmitri
McSweeney, Sean
Gordon, Elspeth
Round, Adam
ISPyB for BioSAXS, the gateway to user autonomy in solution scattering experiments
title ISPyB for BioSAXS, the gateway to user autonomy in solution scattering experiments
title_full ISPyB for BioSAXS, the gateway to user autonomy in solution scattering experiments
title_fullStr ISPyB for BioSAXS, the gateway to user autonomy in solution scattering experiments
title_full_unstemmed ISPyB for BioSAXS, the gateway to user autonomy in solution scattering experiments
title_short ISPyB for BioSAXS, the gateway to user autonomy in solution scattering experiments
title_sort ispyb for biosaxs, the gateway to user autonomy in solution scattering experiments
topic Saxs
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4304688/
https://www.ncbi.nlm.nih.gov/pubmed/25615862
http://dx.doi.org/10.1107/S1399004714019609
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