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Evolution Alters the Enzymatic Reaction Coordinate of Dihydrofolate Reductase
[Image: see text] How evolution has affected enzyme function is a topic of great interest in the field of biophysical chemistry. Evolutionary changes from Escherichia coli dihydrofolate reductase (ecDHFR) to human dihydrofolate reductase (hsDHFR) have resulted in increased catalytic efficiency and a...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical
Society
2014
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4306496/ https://www.ncbi.nlm.nih.gov/pubmed/25369552 http://dx.doi.org/10.1021/jp506373q |
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author | Masterson, Jean E. Schwartz, Steven D. |
author_facet | Masterson, Jean E. Schwartz, Steven D. |
author_sort | Masterson, Jean E. |
collection | PubMed |
description | [Image: see text] How evolution has affected enzyme function is a topic of great interest in the field of biophysical chemistry. Evolutionary changes from Escherichia coli dihydrofolate reductase (ecDHFR) to human dihydrofolate reductase (hsDHFR) have resulted in increased catalytic efficiency and an altered dynamic landscape in the human enzyme. Here, we show that a subpicosecond protein motion is dynamically coupled to hydride transfer catalyzed by hsDHFR but not ecDHFR. This motion propagates through residues that correspond to mutational events along the evolutionary path from ecDHFR to hsDHFR. We observe an increase in the variability of the transition states, reactive conformations, and times of barrier crossing in the human system. In the hsDHFR active site, we detect structural changes that have enabled the coupling of fast protein dynamics to the reaction coordinate. These results indicate a shift in the DHFR family to a form of catalysis that incorporates rapid protein dynamics and a concomitant shift to a more flexible path through reactive phase space. |
format | Online Article Text |
id | pubmed-4306496 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | American Chemical
Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-43064962015-11-04 Evolution Alters the Enzymatic Reaction Coordinate of Dihydrofolate Reductase Masterson, Jean E. Schwartz, Steven D. J Phys Chem B [Image: see text] How evolution has affected enzyme function is a topic of great interest in the field of biophysical chemistry. Evolutionary changes from Escherichia coli dihydrofolate reductase (ecDHFR) to human dihydrofolate reductase (hsDHFR) have resulted in increased catalytic efficiency and an altered dynamic landscape in the human enzyme. Here, we show that a subpicosecond protein motion is dynamically coupled to hydride transfer catalyzed by hsDHFR but not ecDHFR. This motion propagates through residues that correspond to mutational events along the evolutionary path from ecDHFR to hsDHFR. We observe an increase in the variability of the transition states, reactive conformations, and times of barrier crossing in the human system. In the hsDHFR active site, we detect structural changes that have enabled the coupling of fast protein dynamics to the reaction coordinate. These results indicate a shift in the DHFR family to a form of catalysis that incorporates rapid protein dynamics and a concomitant shift to a more flexible path through reactive phase space. American Chemical Society 2014-11-04 2015-01-22 /pmc/articles/PMC4306496/ /pubmed/25369552 http://dx.doi.org/10.1021/jp506373q Text en Copyright © 2014 American Chemical Society This is an open access article published under an ACS AuthorChoice License (http://pubs.acs.org/page/policy/authorchoice_termsofuse.html) , which permits copying and redistribution of the article or any adaptations for non-commercial purposes. |
spellingShingle | Masterson, Jean E. Schwartz, Steven D. Evolution Alters the Enzymatic Reaction Coordinate of Dihydrofolate Reductase |
title | Evolution
Alters the Enzymatic Reaction
Coordinate of Dihydrofolate
Reductase |
title_full | Evolution
Alters the Enzymatic Reaction
Coordinate of Dihydrofolate
Reductase |
title_fullStr | Evolution
Alters the Enzymatic Reaction
Coordinate of Dihydrofolate
Reductase |
title_full_unstemmed | Evolution
Alters the Enzymatic Reaction
Coordinate of Dihydrofolate
Reductase |
title_short | Evolution
Alters the Enzymatic Reaction
Coordinate of Dihydrofolate
Reductase |
title_sort | evolution
alters the enzymatic reaction
coordinate of dihydrofolate
reductase |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4306496/ https://www.ncbi.nlm.nih.gov/pubmed/25369552 http://dx.doi.org/10.1021/jp506373q |
work_keys_str_mv | AT mastersonjeane evolutionalterstheenzymaticreactioncoordinateofdihydrofolatereductase AT schwartzstevend evolutionalterstheenzymaticreactioncoordinateofdihydrofolatereductase |