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Isolation and characterization of 8 microsatellite loci for the “killer shrimp’’, an invasive Ponto-Caspian amphipod Dikerogammarus villosus (Crustacea: Amphipoda)

Dikerogammarus villosus is a freshwater amphipod of the Ponto-Caspian origin recognized as one of the 100 worst alien species in Europe, having negative impact on biodiversity and functioning of the invaded aquatic ecosystems. The species has a wide ecophysiological tolerance and during the last 20 ...

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Autores principales: Rewicz, Tomasz, Wattier, Rémi A., Rigaud, Thierry, Bacela-Spychalska, Karolina, Grabowski, Michal
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Netherlands 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4306734/
https://www.ncbi.nlm.nih.gov/pubmed/25234651
http://dx.doi.org/10.1007/s11033-014-3742-0
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author Rewicz, Tomasz
Wattier, Rémi A.
Rigaud, Thierry
Bacela-Spychalska, Karolina
Grabowski, Michal
author_facet Rewicz, Tomasz
Wattier, Rémi A.
Rigaud, Thierry
Bacela-Spychalska, Karolina
Grabowski, Michal
author_sort Rewicz, Tomasz
collection PubMed
description Dikerogammarus villosus is a freshwater amphipod of the Ponto-Caspian origin recognized as one of the 100 worst alien species in Europe, having negative impact on biodiversity and functioning of the invaded aquatic ecosystems. The species has a wide ecophysiological tolerance and during the last 20 years it has rapidly spread throughout European inland waters. In consequence, it presents a major conservation management problem. We describe eight polymorphic microsatellite loci developed for D. villosus by combining a biotin-enrichment protocol and new generation 454GS-FLX Titanium pyrosequencing technology. When genotyped in 64 individuals from two locations, the loci exhibited a mean diversity of 4.87 alleles per locus (2–13). The mean observed and expected heterozygosities were, respectively, 0.439 (0.091–0.844) and 0.468 (0.089–0.843). Gametic disequilibrium was not detected for any pair of loci. The microsatellite markers will be a valuable tool in assessing the demographic processes associated with invasion of the killer shrimp from a genetic point of view.
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spelling pubmed-43067342015-01-29 Isolation and characterization of 8 microsatellite loci for the “killer shrimp’’, an invasive Ponto-Caspian amphipod Dikerogammarus villosus (Crustacea: Amphipoda) Rewicz, Tomasz Wattier, Rémi A. Rigaud, Thierry Bacela-Spychalska, Karolina Grabowski, Michal Mol Biol Rep Article Dikerogammarus villosus is a freshwater amphipod of the Ponto-Caspian origin recognized as one of the 100 worst alien species in Europe, having negative impact on biodiversity and functioning of the invaded aquatic ecosystems. The species has a wide ecophysiological tolerance and during the last 20 years it has rapidly spread throughout European inland waters. In consequence, it presents a major conservation management problem. We describe eight polymorphic microsatellite loci developed for D. villosus by combining a biotin-enrichment protocol and new generation 454GS-FLX Titanium pyrosequencing technology. When genotyped in 64 individuals from two locations, the loci exhibited a mean diversity of 4.87 alleles per locus (2–13). The mean observed and expected heterozygosities were, respectively, 0.439 (0.091–0.844) and 0.468 (0.089–0.843). Gametic disequilibrium was not detected for any pair of loci. The microsatellite markers will be a valuable tool in assessing the demographic processes associated with invasion of the killer shrimp from a genetic point of view. Springer Netherlands 2014-09-19 2015 /pmc/articles/PMC4306734/ /pubmed/25234651 http://dx.doi.org/10.1007/s11033-014-3742-0 Text en © The Author(s) 2014 https://creativecommons.org/licenses/by/4.0/ Open AccessThis article is distributed under the terms of the Creative Commons Attribution License which permits any use, distribution, and reproduction in any medium, provided the original author(s) and the source are credited.
spellingShingle Article
Rewicz, Tomasz
Wattier, Rémi A.
Rigaud, Thierry
Bacela-Spychalska, Karolina
Grabowski, Michal
Isolation and characterization of 8 microsatellite loci for the “killer shrimp’’, an invasive Ponto-Caspian amphipod Dikerogammarus villosus (Crustacea: Amphipoda)
title Isolation and characterization of 8 microsatellite loci for the “killer shrimp’’, an invasive Ponto-Caspian amphipod Dikerogammarus villosus (Crustacea: Amphipoda)
title_full Isolation and characterization of 8 microsatellite loci for the “killer shrimp’’, an invasive Ponto-Caspian amphipod Dikerogammarus villosus (Crustacea: Amphipoda)
title_fullStr Isolation and characterization of 8 microsatellite loci for the “killer shrimp’’, an invasive Ponto-Caspian amphipod Dikerogammarus villosus (Crustacea: Amphipoda)
title_full_unstemmed Isolation and characterization of 8 microsatellite loci for the “killer shrimp’’, an invasive Ponto-Caspian amphipod Dikerogammarus villosus (Crustacea: Amphipoda)
title_short Isolation and characterization of 8 microsatellite loci for the “killer shrimp’’, an invasive Ponto-Caspian amphipod Dikerogammarus villosus (Crustacea: Amphipoda)
title_sort isolation and characterization of 8 microsatellite loci for the “killer shrimp’’, an invasive ponto-caspian amphipod dikerogammarus villosus (crustacea: amphipoda)
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4306734/
https://www.ncbi.nlm.nih.gov/pubmed/25234651
http://dx.doi.org/10.1007/s11033-014-3742-0
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