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Targeted Next Generation Sequencing Identifies Novel Mutations in RP1 as a Relatively Common Cause of Autosomal Recessive Rod-Cone Dystrophy
We report ophthalmic and genetic findings in families with autosomal recessive rod-cone dystrophy (arRCD) and RP1 mutations. Detailed ophthalmic examination was performed in 242 sporadic and arRCD subjects. Genomic DNA was investigated using our customized next generation sequencing panel targeting...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Hindawi Publishing Corporation
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4307388/ https://www.ncbi.nlm.nih.gov/pubmed/25692139 http://dx.doi.org/10.1155/2015/485624 |
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author | El Shamieh, Said Boulanger-Scemama, Elise Lancelot, Marie-Elise Antonio, Aline Démontant, Vanessa Condroyer, Christel Letexier, Mélanie Saraiva, Jean-Paul Mohand-Saïd, Saddek Sahel, José-Alain Audo, Isabelle Zeitz, Christina |
author_facet | El Shamieh, Said Boulanger-Scemama, Elise Lancelot, Marie-Elise Antonio, Aline Démontant, Vanessa Condroyer, Christel Letexier, Mélanie Saraiva, Jean-Paul Mohand-Saïd, Saddek Sahel, José-Alain Audo, Isabelle Zeitz, Christina |
author_sort | El Shamieh, Said |
collection | PubMed |
description | We report ophthalmic and genetic findings in families with autosomal recessive rod-cone dystrophy (arRCD) and RP1 mutations. Detailed ophthalmic examination was performed in 242 sporadic and arRCD subjects. Genomic DNA was investigated using our customized next generation sequencing panel targeting up to 123 genes implicated in inherited retinal disorders. Stringent filtering coupled with Sanger sequencing and followed by cosegregation analysis was performed to confirm biallelism and the implication of the most likely disease causing variants. Sequencing identified 9 RP1 mutations in 7 index cases. Eight of the mutations were novel, and all cosegregated with severe arRCD phenotype, found associated with additional macular changes. Among the identified mutations, 4 belong to a region, previously associated with arRCD, and 5 others in a region previously associated with adRCD. Our prevalence studies showed that RP1 mutations account for up to 2.5% of arRCD. These results point out for the necessity of sequencing RP1 when genetically investigating sporadic and arRCD. It further highlights the interest of unbiased sequencing technique, which allows investigating the implication of the same gene in different modes of inheritance. Finally, it reports that different regions of RP1 can also lead to arRCD. |
format | Online Article Text |
id | pubmed-4307388 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Hindawi Publishing Corporation |
record_format | MEDLINE/PubMed |
spelling | pubmed-43073882015-02-17 Targeted Next Generation Sequencing Identifies Novel Mutations in RP1 as a Relatively Common Cause of Autosomal Recessive Rod-Cone Dystrophy El Shamieh, Said Boulanger-Scemama, Elise Lancelot, Marie-Elise Antonio, Aline Démontant, Vanessa Condroyer, Christel Letexier, Mélanie Saraiva, Jean-Paul Mohand-Saïd, Saddek Sahel, José-Alain Audo, Isabelle Zeitz, Christina Biomed Res Int Research Article We report ophthalmic and genetic findings in families with autosomal recessive rod-cone dystrophy (arRCD) and RP1 mutations. Detailed ophthalmic examination was performed in 242 sporadic and arRCD subjects. Genomic DNA was investigated using our customized next generation sequencing panel targeting up to 123 genes implicated in inherited retinal disorders. Stringent filtering coupled with Sanger sequencing and followed by cosegregation analysis was performed to confirm biallelism and the implication of the most likely disease causing variants. Sequencing identified 9 RP1 mutations in 7 index cases. Eight of the mutations were novel, and all cosegregated with severe arRCD phenotype, found associated with additional macular changes. Among the identified mutations, 4 belong to a region, previously associated with arRCD, and 5 others in a region previously associated with adRCD. Our prevalence studies showed that RP1 mutations account for up to 2.5% of arRCD. These results point out for the necessity of sequencing RP1 when genetically investigating sporadic and arRCD. It further highlights the interest of unbiased sequencing technique, which allows investigating the implication of the same gene in different modes of inheritance. Finally, it reports that different regions of RP1 can also lead to arRCD. Hindawi Publishing Corporation 2015 2015-01-06 /pmc/articles/PMC4307388/ /pubmed/25692139 http://dx.doi.org/10.1155/2015/485624 Text en Copyright © 2015 Said El Shamieh et al. https://creativecommons.org/licenses/by/3.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article El Shamieh, Said Boulanger-Scemama, Elise Lancelot, Marie-Elise Antonio, Aline Démontant, Vanessa Condroyer, Christel Letexier, Mélanie Saraiva, Jean-Paul Mohand-Saïd, Saddek Sahel, José-Alain Audo, Isabelle Zeitz, Christina Targeted Next Generation Sequencing Identifies Novel Mutations in RP1 as a Relatively Common Cause of Autosomal Recessive Rod-Cone Dystrophy |
title | Targeted Next Generation Sequencing Identifies Novel Mutations in RP1 as a Relatively Common Cause of Autosomal Recessive Rod-Cone Dystrophy |
title_full | Targeted Next Generation Sequencing Identifies Novel Mutations in RP1 as a Relatively Common Cause of Autosomal Recessive Rod-Cone Dystrophy |
title_fullStr | Targeted Next Generation Sequencing Identifies Novel Mutations in RP1 as a Relatively Common Cause of Autosomal Recessive Rod-Cone Dystrophy |
title_full_unstemmed | Targeted Next Generation Sequencing Identifies Novel Mutations in RP1 as a Relatively Common Cause of Autosomal Recessive Rod-Cone Dystrophy |
title_short | Targeted Next Generation Sequencing Identifies Novel Mutations in RP1 as a Relatively Common Cause of Autosomal Recessive Rod-Cone Dystrophy |
title_sort | targeted next generation sequencing identifies novel mutations in rp1 as a relatively common cause of autosomal recessive rod-cone dystrophy |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4307388/ https://www.ncbi.nlm.nih.gov/pubmed/25692139 http://dx.doi.org/10.1155/2015/485624 |
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