Cargando…

Model Selection Emphasises the Importance of Non-Chromosomal Information in Genetic Studies

Ever since the case of the missing heritability was highlighted some years ago, scientists have been investigating various possible explanations for the issue. However, none of these explanations include non-chromosomal genetic information. Here we describe explicitly how chromosomal and non-chromos...

Descripción completa

Detalles Bibliográficos
Autores principales: Rawi, Reda, El Anbari, Mohamed, Bensmail, Halima
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4308103/
https://www.ncbi.nlm.nih.gov/pubmed/25626013
http://dx.doi.org/10.1371/journal.pone.0117014
_version_ 1782354549327003648
author Rawi, Reda
El Anbari, Mohamed
Bensmail, Halima
author_facet Rawi, Reda
El Anbari, Mohamed
Bensmail, Halima
author_sort Rawi, Reda
collection PubMed
description Ever since the case of the missing heritability was highlighted some years ago, scientists have been investigating various possible explanations for the issue. However, none of these explanations include non-chromosomal genetic information. Here we describe explicitly how chromosomal and non-chromosomal modifiers collectively influence the heritability of a trait, in this case, the growth rate of yeast. Our results show that the non-chromosomal contribution can be large, adding another dimension to the estimation of heritability. We also discovered, combining the strength of LASSO with model selection, that the interaction of chromosomal and non-chromosomal information is essential in describing phenotypes.
format Online
Article
Text
id pubmed-4308103
institution National Center for Biotechnology Information
language English
publishDate 2015
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-43081032015-02-06 Model Selection Emphasises the Importance of Non-Chromosomal Information in Genetic Studies Rawi, Reda El Anbari, Mohamed Bensmail, Halima PLoS One Research Article Ever since the case of the missing heritability was highlighted some years ago, scientists have been investigating various possible explanations for the issue. However, none of these explanations include non-chromosomal genetic information. Here we describe explicitly how chromosomal and non-chromosomal modifiers collectively influence the heritability of a trait, in this case, the growth rate of yeast. Our results show that the non-chromosomal contribution can be large, adding another dimension to the estimation of heritability. We also discovered, combining the strength of LASSO with model selection, that the interaction of chromosomal and non-chromosomal information is essential in describing phenotypes. Public Library of Science 2015-01-27 /pmc/articles/PMC4308103/ /pubmed/25626013 http://dx.doi.org/10.1371/journal.pone.0117014 Text en © 2015 Rawi et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Rawi, Reda
El Anbari, Mohamed
Bensmail, Halima
Model Selection Emphasises the Importance of Non-Chromosomal Information in Genetic Studies
title Model Selection Emphasises the Importance of Non-Chromosomal Information in Genetic Studies
title_full Model Selection Emphasises the Importance of Non-Chromosomal Information in Genetic Studies
title_fullStr Model Selection Emphasises the Importance of Non-Chromosomal Information in Genetic Studies
title_full_unstemmed Model Selection Emphasises the Importance of Non-Chromosomal Information in Genetic Studies
title_short Model Selection Emphasises the Importance of Non-Chromosomal Information in Genetic Studies
title_sort model selection emphasises the importance of non-chromosomal information in genetic studies
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4308103/
https://www.ncbi.nlm.nih.gov/pubmed/25626013
http://dx.doi.org/10.1371/journal.pone.0117014
work_keys_str_mv AT rawireda modelselectionemphasisestheimportanceofnonchromosomalinformationingeneticstudies
AT elanbarimohamed modelselectionemphasisestheimportanceofnonchromosomalinformationingeneticstudies
AT bensmailhalima modelselectionemphasisestheimportanceofnonchromosomalinformationingeneticstudies