FungiFun2: a comprehensive online resource for systematic analysis of gene lists from fungal species

Summary: Systematically extracting biological meaning from omics data is a major challenge in systems biology. Enrichment analysis is often used to identify characteristic patterns in candidate lists. FungiFun is a user-friendly Web tool for functional enrichment analysis of fungal genes and protein...

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Autores principales: Priebe, Steffen, Kreisel, Christian, Horn, Fabian, Guthke, Reinhard, Linde, Jörg
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2015
Materias:
Applications Notes
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4308660/
https://www.ncbi.nlm.nih.gov/pubmed/25294921
http://dx.doi.org/10.1093/bioinformatics/btu627
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author Priebe, Steffen
Kreisel, Christian
Horn, Fabian
Guthke, Reinhard
Linde, Jörg
author_facet Priebe, Steffen
Kreisel, Christian
Horn, Fabian
Guthke, Reinhard
Linde, Jörg
author_sort Priebe, Steffen
collection PubMed
description Summary: Systematically extracting biological meaning from omics data is a major challenge in systems biology. Enrichment analysis is often used to identify characteristic patterns in candidate lists. FungiFun is a user-friendly Web tool for functional enrichment analysis of fungal genes and proteins. The novel tool FungiFun2 uses a completely revised data management system and thus allows enrichment analysis for 298 currently available fungal strains published in standard databases. FungiFun2 offers a modern Web interface and creates interactive tables, charts and figures, which users can directly manipulate to their needs. Availability and implementation: FungiFun2, examples and tutorials are publicly available at https://elbe.hki-jena.de/fungifun/. Contact: steffen.priebe@hki-jena.de or joerg.linde@hki-jena.de
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spelling pubmed-43086602015-02-24 FungiFun2: a comprehensive online resource for systematic analysis of gene lists from fungal species Priebe, Steffen Kreisel, Christian Horn, Fabian Guthke, Reinhard Linde, Jörg Bioinformatics Applications Notes Summary: Systematically extracting biological meaning from omics data is a major challenge in systems biology. Enrichment analysis is often used to identify characteristic patterns in candidate lists. FungiFun is a user-friendly Web tool for functional enrichment analysis of fungal genes and proteins. The novel tool FungiFun2 uses a completely revised data management system and thus allows enrichment analysis for 298 currently available fungal strains published in standard databases. FungiFun2 offers a modern Web interface and creates interactive tables, charts and figures, which users can directly manipulate to their needs. Availability and implementation: FungiFun2, examples and tutorials are publicly available at https://elbe.hki-jena.de/fungifun/. Contact: steffen.priebe@hki-jena.de or joerg.linde@hki-jena.de Oxford University Press 2015-02-01 2014-10-07 /pmc/articles/PMC4308660/ /pubmed/25294921 http://dx.doi.org/10.1093/bioinformatics/btu627 Text en © The Author 2014. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Applications Notes
Priebe, Steffen
Kreisel, Christian
Horn, Fabian
Guthke, Reinhard
Linde, Jörg
FungiFun2: a comprehensive online resource for systematic analysis of gene lists from fungal species
title FungiFun2: a comprehensive online resource for systematic analysis of gene lists from fungal species
title_full FungiFun2: a comprehensive online resource for systematic analysis of gene lists from fungal species
title_fullStr FungiFun2: a comprehensive online resource for systematic analysis of gene lists from fungal species
title_full_unstemmed FungiFun2: a comprehensive online resource for systematic analysis of gene lists from fungal species
title_short FungiFun2: a comprehensive online resource for systematic analysis of gene lists from fungal species
title_sort fungifun2: a comprehensive online resource for systematic analysis of gene lists from fungal species
topic Applications Notes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4308660/
https://www.ncbi.nlm.nih.gov/pubmed/25294921
http://dx.doi.org/10.1093/bioinformatics/btu627
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