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Gateways to the FANTOM5 promoter level mammalian expression atlas
The FANTOM5 project investigates transcription initiation activities in more than 1,000 human and mouse primary cells, cell lines and tissues using CAGE. Based on manual curation of sample information and development of an ontology for sample classification, we assemble the resulting data into a cen...
| Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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| Formato: | Online Artículo Texto |
| Lenguaje: | English |
| Publicado: |
BioMed Central
2015
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| Materias: | |
| Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4310165/ https://www.ncbi.nlm.nih.gov/pubmed/25723102 http://dx.doi.org/10.1186/s13059-014-0560-6 |
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| author | Lizio, Marina Harshbarger, Jayson Shimoji, Hisashi Severin, Jessica Kasukawa, Takeya Sahin, Serkan Abugessaisa, Imad Fukuda, Shiro Hori, Fumi Ishikawa-Kato, Sachi Mungall, Christopher J Arner, Erik Baillie, J Kenneth Bertin, Nicolas Bono, Hidemasa de Hoon, Michiel Diehl, Alexander D Dimont, Emmanuel Freeman, Tom C Fujieda, Kaori Hide, Winston Kaliyaperumal, Rajaram Katayama, Toshiaki Lassmann, Timo Meehan, Terrence F Nishikata, Koro Ono, Hiromasa Rehli, Michael Sandelin, Albin Schultes, Erik A ‘t Hoen, Peter AC Tatum, Zuotian Thompson, Mark Toyoda, Tetsuro Wright, Derek W Daub, Carsten O Itoh, Masayoshi Carninci, Piero Hayashizaki, Yoshihide Forrest, Alistair RR Kawaji, Hideya |
| author_facet | Lizio, Marina Harshbarger, Jayson Shimoji, Hisashi Severin, Jessica Kasukawa, Takeya Sahin, Serkan Abugessaisa, Imad Fukuda, Shiro Hori, Fumi Ishikawa-Kato, Sachi Mungall, Christopher J Arner, Erik Baillie, J Kenneth Bertin, Nicolas Bono, Hidemasa de Hoon, Michiel Diehl, Alexander D Dimont, Emmanuel Freeman, Tom C Fujieda, Kaori Hide, Winston Kaliyaperumal, Rajaram Katayama, Toshiaki Lassmann, Timo Meehan, Terrence F Nishikata, Koro Ono, Hiromasa Rehli, Michael Sandelin, Albin Schultes, Erik A ‘t Hoen, Peter AC Tatum, Zuotian Thompson, Mark Toyoda, Tetsuro Wright, Derek W Daub, Carsten O Itoh, Masayoshi Carninci, Piero Hayashizaki, Yoshihide Forrest, Alistair RR Kawaji, Hideya |
| author_sort | Lizio, Marina |
| collection | PubMed |
| description | The FANTOM5 project investigates transcription initiation activities in more than 1,000 human and mouse primary cells, cell lines and tissues using CAGE. Based on manual curation of sample information and development of an ontology for sample classification, we assemble the resulting data into a centralized data resource (http://fantom.gsc.riken.jp/5/). This resource contains web-based tools and data-access points for the research community to search and extract data related to samples, genes, promoter activities, transcription factors and enhancers across the FANTOM5 atlas. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s13059-014-0560-6) contains supplementary material, which is available to authorized users. |
| format | Online Article Text |
| id | pubmed-4310165 |
| institution | National Center for Biotechnology Information |
| language | English |
| publishDate | 2015 |
| publisher | BioMed Central |
| record_format | MEDLINE/PubMed |
| spelling | pubmed-43101652015-01-30 Gateways to the FANTOM5 promoter level mammalian expression atlas Lizio, Marina Harshbarger, Jayson Shimoji, Hisashi Severin, Jessica Kasukawa, Takeya Sahin, Serkan Abugessaisa, Imad Fukuda, Shiro Hori, Fumi Ishikawa-Kato, Sachi Mungall, Christopher J Arner, Erik Baillie, J Kenneth Bertin, Nicolas Bono, Hidemasa de Hoon, Michiel Diehl, Alexander D Dimont, Emmanuel Freeman, Tom C Fujieda, Kaori Hide, Winston Kaliyaperumal, Rajaram Katayama, Toshiaki Lassmann, Timo Meehan, Terrence F Nishikata, Koro Ono, Hiromasa Rehli, Michael Sandelin, Albin Schultes, Erik A ‘t Hoen, Peter AC Tatum, Zuotian Thompson, Mark Toyoda, Tetsuro Wright, Derek W Daub, Carsten O Itoh, Masayoshi Carninci, Piero Hayashizaki, Yoshihide Forrest, Alistair RR Kawaji, Hideya Genome Biol Software The FANTOM5 project investigates transcription initiation activities in more than 1,000 human and mouse primary cells, cell lines and tissues using CAGE. Based on manual curation of sample information and development of an ontology for sample classification, we assemble the resulting data into a centralized data resource (http://fantom.gsc.riken.jp/5/). This resource contains web-based tools and data-access points for the research community to search and extract data related to samples, genes, promoter activities, transcription factors and enhancers across the FANTOM5 atlas. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s13059-014-0560-6) contains supplementary material, which is available to authorized users. BioMed Central 2015-01-05 2015 /pmc/articles/PMC4310165/ /pubmed/25723102 http://dx.doi.org/10.1186/s13059-014-0560-6 Text en © Lizio et al.; licensee BioMed Central. 2015 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
| spellingShingle | Software Lizio, Marina Harshbarger, Jayson Shimoji, Hisashi Severin, Jessica Kasukawa, Takeya Sahin, Serkan Abugessaisa, Imad Fukuda, Shiro Hori, Fumi Ishikawa-Kato, Sachi Mungall, Christopher J Arner, Erik Baillie, J Kenneth Bertin, Nicolas Bono, Hidemasa de Hoon, Michiel Diehl, Alexander D Dimont, Emmanuel Freeman, Tom C Fujieda, Kaori Hide, Winston Kaliyaperumal, Rajaram Katayama, Toshiaki Lassmann, Timo Meehan, Terrence F Nishikata, Koro Ono, Hiromasa Rehli, Michael Sandelin, Albin Schultes, Erik A ‘t Hoen, Peter AC Tatum, Zuotian Thompson, Mark Toyoda, Tetsuro Wright, Derek W Daub, Carsten O Itoh, Masayoshi Carninci, Piero Hayashizaki, Yoshihide Forrest, Alistair RR Kawaji, Hideya Gateways to the FANTOM5 promoter level mammalian expression atlas |
| title | Gateways to the FANTOM5 promoter level mammalian expression atlas |
| title_full | Gateways to the FANTOM5 promoter level mammalian expression atlas |
| title_fullStr | Gateways to the FANTOM5 promoter level mammalian expression atlas |
| title_full_unstemmed | Gateways to the FANTOM5 promoter level mammalian expression atlas |
| title_short | Gateways to the FANTOM5 promoter level mammalian expression atlas |
| title_sort | gateways to the fantom5 promoter level mammalian expression atlas |
| topic | Software |
| url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4310165/ https://www.ncbi.nlm.nih.gov/pubmed/25723102 http://dx.doi.org/10.1186/s13059-014-0560-6 |
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