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Introducing the Consolidated Species Concept to resolve species in the Teratosphaeriaceae
The Teratosphaeriaceae represents a recently established family that includes numerous saprobic, extremophilic, human opportunistic, and plant pathogenic fungi. Partial DNA sequence data of the 28S rRNA and RPB2 genes strongly support a separation of the Mycosphaerellaceae from the Teratosphaeriacea...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Naturalis Biodiversity Center & Centraallbureau voor Schimmelcultures
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4312929/ https://www.ncbi.nlm.nih.gov/pubmed/25737591 http://dx.doi.org/10.3767/003158514X681981 |
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author | Quaedvlieg, W. Binder, M. Groenewald, J.Z. Summerell, B.A. Carnegie, A.J. Burgess, T.I. Crous, P.W. |
author_facet | Quaedvlieg, W. Binder, M. Groenewald, J.Z. Summerell, B.A. Carnegie, A.J. Burgess, T.I. Crous, P.W. |
author_sort | Quaedvlieg, W. |
collection | PubMed |
description | The Teratosphaeriaceae represents a recently established family that includes numerous saprobic, extremophilic, human opportunistic, and plant pathogenic fungi. Partial DNA sequence data of the 28S rRNA and RPB2 genes strongly support a separation of the Mycosphaerellaceae from the Teratosphaeriaceae, and also provide support for the Extremaceae and Neodevriesiaceae, two novel families including many extremophilic fungi that occur on a diversity of substrates. In addition, a multi-locus DNA sequence dataset was generated (ITS, LSU, Btub, Act, RPB2, EF-1α and Cal) to distinguish taxa in Mycosphaerella and Teratosphaeria associated with leaf disease of Eucalyptus, leading to the introduction of 23 novel genera, five species and 48 new combinations. Species are distinguished based on a polyphasic approach, combining morphological, ecological and phylogenetic species concepts, named here as the Consolidated Species Concept (CSC). From the DNA sequence data generated, we show that each one of the five coding genes tested, reliably identify most of the species present in this dataset (except species of Pseudocercospora). The ITS gene serves as a primary barcode locus as it is easily generated and has the most extensive dataset available, while either Btub, EF-1α or RPB2 provide a useful secondary barcode locus. |
format | Online Article Text |
id | pubmed-4312929 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Naturalis Biodiversity Center & Centraallbureau voor Schimmelcultures |
record_format | MEDLINE/PubMed |
spelling | pubmed-43129292015-03-03 Introducing the Consolidated Species Concept to resolve species in the Teratosphaeriaceae Quaedvlieg, W. Binder, M. Groenewald, J.Z. Summerell, B.A. Carnegie, A.J. Burgess, T.I. Crous, P.W. Persoonia Research Article The Teratosphaeriaceae represents a recently established family that includes numerous saprobic, extremophilic, human opportunistic, and plant pathogenic fungi. Partial DNA sequence data of the 28S rRNA and RPB2 genes strongly support a separation of the Mycosphaerellaceae from the Teratosphaeriaceae, and also provide support for the Extremaceae and Neodevriesiaceae, two novel families including many extremophilic fungi that occur on a diversity of substrates. In addition, a multi-locus DNA sequence dataset was generated (ITS, LSU, Btub, Act, RPB2, EF-1α and Cal) to distinguish taxa in Mycosphaerella and Teratosphaeria associated with leaf disease of Eucalyptus, leading to the introduction of 23 novel genera, five species and 48 new combinations. Species are distinguished based on a polyphasic approach, combining morphological, ecological and phylogenetic species concepts, named here as the Consolidated Species Concept (CSC). From the DNA sequence data generated, we show that each one of the five coding genes tested, reliably identify most of the species present in this dataset (except species of Pseudocercospora). The ITS gene serves as a primary barcode locus as it is easily generated and has the most extensive dataset available, while either Btub, EF-1α or RPB2 provide a useful secondary barcode locus. Naturalis Biodiversity Center & Centraallbureau voor Schimmelcultures 2014-05-15 2014-12 /pmc/articles/PMC4312929/ /pubmed/25737591 http://dx.doi.org/10.3767/003158514X681981 Text en © 2014 Naturalis Biodiversity Center & Centraalbureau voor Schimmelcultures http://creativecommons.org/licenses/by-nc-nd/3.0/legalcode You are free to share - to copy, distribute and transmit the work, under the following conditions: Attribution: You must attribute the work in the manner specified by the author or licensor (but not in any way that suggests that they endorse you or your use of the work). Non-commercial: You may not use this work for commercial purposes. No derivative works: You may not alter, transform, or build upon this work. For any reuse or distribution, you must make clear to others the license terms of this work, which can be found at http://creativecommons.org/licenses/by-nc-nd/3.0/legalcode. Any of the above conditions can be waived if you get permission from the copyright holder. Nothing in this license impairs or restricts the author’s moral rights. |
spellingShingle | Research Article Quaedvlieg, W. Binder, M. Groenewald, J.Z. Summerell, B.A. Carnegie, A.J. Burgess, T.I. Crous, P.W. Introducing the Consolidated Species Concept to resolve species in the Teratosphaeriaceae |
title | Introducing the Consolidated Species Concept to resolve species in the Teratosphaeriaceae |
title_full | Introducing the Consolidated Species Concept to resolve species in the Teratosphaeriaceae |
title_fullStr | Introducing the Consolidated Species Concept to resolve species in the Teratosphaeriaceae |
title_full_unstemmed | Introducing the Consolidated Species Concept to resolve species in the Teratosphaeriaceae |
title_short | Introducing the Consolidated Species Concept to resolve species in the Teratosphaeriaceae |
title_sort | introducing the consolidated species concept to resolve species in the teratosphaeriaceae |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4312929/ https://www.ncbi.nlm.nih.gov/pubmed/25737591 http://dx.doi.org/10.3767/003158514X681981 |
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