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Diversity through duplication: Whole-genome sequencing reveals novel gene retrocopies in the human population
Gene retrocopies are generated by reverse transcription and genomic integration of mRNA. As such, retrocopies present an important exception to the central dogma of molecular biology, and have substantially impacted the functional landscape of the metazoan genome. While an estimated 8,000–17,000 ret...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Blackwell Publishing Ltd
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4314676/ https://www.ncbi.nlm.nih.gov/pubmed/24615986 http://dx.doi.org/10.1002/bies.201300181 |
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author | Richardson, Sandra R Salvador-Palomeque, Carmen Faulkner, Geoffrey J |
author_facet | Richardson, Sandra R Salvador-Palomeque, Carmen Faulkner, Geoffrey J |
author_sort | Richardson, Sandra R |
collection | PubMed |
description | Gene retrocopies are generated by reverse transcription and genomic integration of mRNA. As such, retrocopies present an important exception to the central dogma of molecular biology, and have substantially impacted the functional landscape of the metazoan genome. While an estimated 8,000–17,000 retrocopies exist in the human genome reference sequence, the extent of variation between individuals in terms of retrocopy content has remained largely unexplored. Three recent studies by Abyzov et al., Ewing et al. and Schrider et al. have exploited 1,000 Genomes Project Consortium data, as well as other sources of whole-genome sequencing data, to uncover novel gene retrocopies. Here, we compare the methods and results of these three studies, highlight the impact of retrocopies in human diversity and genome evolution, and speculate on the potential for somatic gene retrocopies to impact cancer etiology and genetic diversity among individual neurons in the mammalian brain. |
format | Online Article Text |
id | pubmed-4314676 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Blackwell Publishing Ltd |
record_format | MEDLINE/PubMed |
spelling | pubmed-43146762015-02-04 Diversity through duplication: Whole-genome sequencing reveals novel gene retrocopies in the human population Richardson, Sandra R Salvador-Palomeque, Carmen Faulkner, Geoffrey J Bioessays Prospects & Overviews Gene retrocopies are generated by reverse transcription and genomic integration of mRNA. As such, retrocopies present an important exception to the central dogma of molecular biology, and have substantially impacted the functional landscape of the metazoan genome. While an estimated 8,000–17,000 retrocopies exist in the human genome reference sequence, the extent of variation between individuals in terms of retrocopy content has remained largely unexplored. Three recent studies by Abyzov et al., Ewing et al. and Schrider et al. have exploited 1,000 Genomes Project Consortium data, as well as other sources of whole-genome sequencing data, to uncover novel gene retrocopies. Here, we compare the methods and results of these three studies, highlight the impact of retrocopies in human diversity and genome evolution, and speculate on the potential for somatic gene retrocopies to impact cancer etiology and genetic diversity among individual neurons in the mammalian brain. Blackwell Publishing Ltd 2014-05 2014-02-25 /pmc/articles/PMC4314676/ /pubmed/24615986 http://dx.doi.org/10.1002/bies.201300181 Text en © 2014 The Authors. Bioessays published by WILEY Periodicals, Inc. http://creativecommons.org/licenses/by-nc/3.0/ This is an open access article under the terms of the Creative Commons Attribution-NonCommercial License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes. |
spellingShingle | Prospects & Overviews Richardson, Sandra R Salvador-Palomeque, Carmen Faulkner, Geoffrey J Diversity through duplication: Whole-genome sequencing reveals novel gene retrocopies in the human population |
title | Diversity through duplication: Whole-genome sequencing reveals novel gene retrocopies in the human population |
title_full | Diversity through duplication: Whole-genome sequencing reveals novel gene retrocopies in the human population |
title_fullStr | Diversity through duplication: Whole-genome sequencing reveals novel gene retrocopies in the human population |
title_full_unstemmed | Diversity through duplication: Whole-genome sequencing reveals novel gene retrocopies in the human population |
title_short | Diversity through duplication: Whole-genome sequencing reveals novel gene retrocopies in the human population |
title_sort | diversity through duplication: whole-genome sequencing reveals novel gene retrocopies in the human population |
topic | Prospects & Overviews |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4314676/ https://www.ncbi.nlm.nih.gov/pubmed/24615986 http://dx.doi.org/10.1002/bies.201300181 |
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