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Diversity through duplication: Whole-genome sequencing reveals novel gene retrocopies in the human population

Gene retrocopies are generated by reverse transcription and genomic integration of mRNA. As such, retrocopies present an important exception to the central dogma of molecular biology, and have substantially impacted the functional landscape of the metazoan genome. While an estimated 8,000–17,000 ret...

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Autores principales: Richardson, Sandra R, Salvador-Palomeque, Carmen, Faulkner, Geoffrey J
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Blackwell Publishing Ltd 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4314676/
https://www.ncbi.nlm.nih.gov/pubmed/24615986
http://dx.doi.org/10.1002/bies.201300181
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author Richardson, Sandra R
Salvador-Palomeque, Carmen
Faulkner, Geoffrey J
author_facet Richardson, Sandra R
Salvador-Palomeque, Carmen
Faulkner, Geoffrey J
author_sort Richardson, Sandra R
collection PubMed
description Gene retrocopies are generated by reverse transcription and genomic integration of mRNA. As such, retrocopies present an important exception to the central dogma of molecular biology, and have substantially impacted the functional landscape of the metazoan genome. While an estimated 8,000–17,000 retrocopies exist in the human genome reference sequence, the extent of variation between individuals in terms of retrocopy content has remained largely unexplored. Three recent studies by Abyzov et al., Ewing et al. and Schrider et al. have exploited 1,000 Genomes Project Consortium data, as well as other sources of whole-genome sequencing data, to uncover novel gene retrocopies. Here, we compare the methods and results of these three studies, highlight the impact of retrocopies in human diversity and genome evolution, and speculate on the potential for somatic gene retrocopies to impact cancer etiology and genetic diversity among individual neurons in the mammalian brain.
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spelling pubmed-43146762015-02-04 Diversity through duplication: Whole-genome sequencing reveals novel gene retrocopies in the human population Richardson, Sandra R Salvador-Palomeque, Carmen Faulkner, Geoffrey J Bioessays Prospects & Overviews Gene retrocopies are generated by reverse transcription and genomic integration of mRNA. As such, retrocopies present an important exception to the central dogma of molecular biology, and have substantially impacted the functional landscape of the metazoan genome. While an estimated 8,000–17,000 retrocopies exist in the human genome reference sequence, the extent of variation between individuals in terms of retrocopy content has remained largely unexplored. Three recent studies by Abyzov et al., Ewing et al. and Schrider et al. have exploited 1,000 Genomes Project Consortium data, as well as other sources of whole-genome sequencing data, to uncover novel gene retrocopies. Here, we compare the methods and results of these three studies, highlight the impact of retrocopies in human diversity and genome evolution, and speculate on the potential for somatic gene retrocopies to impact cancer etiology and genetic diversity among individual neurons in the mammalian brain. Blackwell Publishing Ltd 2014-05 2014-02-25 /pmc/articles/PMC4314676/ /pubmed/24615986 http://dx.doi.org/10.1002/bies.201300181 Text en © 2014 The Authors. Bioessays published by WILEY Periodicals, Inc. http://creativecommons.org/licenses/by-nc/3.0/ This is an open access article under the terms of the Creative Commons Attribution-NonCommercial License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes.
spellingShingle Prospects & Overviews
Richardson, Sandra R
Salvador-Palomeque, Carmen
Faulkner, Geoffrey J
Diversity through duplication: Whole-genome sequencing reveals novel gene retrocopies in the human population
title Diversity through duplication: Whole-genome sequencing reveals novel gene retrocopies in the human population
title_full Diversity through duplication: Whole-genome sequencing reveals novel gene retrocopies in the human population
title_fullStr Diversity through duplication: Whole-genome sequencing reveals novel gene retrocopies in the human population
title_full_unstemmed Diversity through duplication: Whole-genome sequencing reveals novel gene retrocopies in the human population
title_short Diversity through duplication: Whole-genome sequencing reveals novel gene retrocopies in the human population
title_sort diversity through duplication: whole-genome sequencing reveals novel gene retrocopies in the human population
topic Prospects & Overviews
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4314676/
https://www.ncbi.nlm.nih.gov/pubmed/24615986
http://dx.doi.org/10.1002/bies.201300181
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