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Draft genome sequence of Halomonas lutea strain YIM 91125(T) (DSM 23508(T)) isolated from the alkaline Lake Ebinur in Northwest China

Species of the genus Halomonas are halophilic and their flexible adaption to changes of salinity and temperature brings considerable potential biotechnology applications, such as degradation of organic pollutants and enzyme production. The type strain Halomonas lutea YIM 91125(T) was isolated from a...

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Autores principales: Gao, Xiao-Yang, Zhi, Xiao-Yang, Li, Hong-Wei, Zhou, Yu, Lapidus, Alla, Han, James, Haynes, Matthew, Lobos, Elizabeth, Huntemann, Marcel, Pati, Amrita, Ivanova, Natalia N, Mavromatis, Konstantinos, Tindall, Brian J, Markowitz, Victor, Woyke, Tanja, Klenk, Hans-Peter, Kyrpides, Nikos C, Li, Wen-Jun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4315136/
https://www.ncbi.nlm.nih.gov/pubmed/25678942
http://dx.doi.org/10.1186/1944-3277-10-1
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author Gao, Xiao-Yang
Zhi, Xiao-Yang
Li, Hong-Wei
Zhou, Yu
Lapidus, Alla
Han, James
Haynes, Matthew
Lobos, Elizabeth
Huntemann, Marcel
Pati, Amrita
Ivanova, Natalia N
Mavromatis, Konstantinos
Tindall, Brian J
Markowitz, Victor
Woyke, Tanja
Klenk, Hans-Peter
Kyrpides, Nikos C
Li, Wen-Jun
author_facet Gao, Xiao-Yang
Zhi, Xiao-Yang
Li, Hong-Wei
Zhou, Yu
Lapidus, Alla
Han, James
Haynes, Matthew
Lobos, Elizabeth
Huntemann, Marcel
Pati, Amrita
Ivanova, Natalia N
Mavromatis, Konstantinos
Tindall, Brian J
Markowitz, Victor
Woyke, Tanja
Klenk, Hans-Peter
Kyrpides, Nikos C
Li, Wen-Jun
author_sort Gao, Xiao-Yang
collection PubMed
description Species of the genus Halomonas are halophilic and their flexible adaption to changes of salinity and temperature brings considerable potential biotechnology applications, such as degradation of organic pollutants and enzyme production. The type strain Halomonas lutea YIM 91125(T) was isolated from a hypersaline lake in China. The genome of strain YIM 91125(T) becomes the twelfth species sequenced in Halomonas, and the thirteenth species sequenced in Halomonadaceae. We described the features of H. lutea YIM 91125(T), together with the high quality draft genome sequence and annotation of its type strain. The 4,533,090 bp long genome of strain YIM 91125(T) with its 4,284 protein-coding and 84 RNA genes is a part of Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG-I) project. From the viewpoint of comparative genomics, H. lutea has a larger genome size and more specific genes, which indicated acquisition of function bringing better adaption to its environment. DDH analysis demonstrated that H. lutea is a distinctive species, and halophilic features and nitrogen metabolism related genes were discovered in its genome.
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spelling pubmed-43151362015-02-12 Draft genome sequence of Halomonas lutea strain YIM 91125(T) (DSM 23508(T)) isolated from the alkaline Lake Ebinur in Northwest China Gao, Xiao-Yang Zhi, Xiao-Yang Li, Hong-Wei Zhou, Yu Lapidus, Alla Han, James Haynes, Matthew Lobos, Elizabeth Huntemann, Marcel Pati, Amrita Ivanova, Natalia N Mavromatis, Konstantinos Tindall, Brian J Markowitz, Victor Woyke, Tanja Klenk, Hans-Peter Kyrpides, Nikos C Li, Wen-Jun Stand Genomic Sci Short Genome Report Species of the genus Halomonas are halophilic and their flexible adaption to changes of salinity and temperature brings considerable potential biotechnology applications, such as degradation of organic pollutants and enzyme production. The type strain Halomonas lutea YIM 91125(T) was isolated from a hypersaline lake in China. The genome of strain YIM 91125(T) becomes the twelfth species sequenced in Halomonas, and the thirteenth species sequenced in Halomonadaceae. We described the features of H. lutea YIM 91125(T), together with the high quality draft genome sequence and annotation of its type strain. The 4,533,090 bp long genome of strain YIM 91125(T) with its 4,284 protein-coding and 84 RNA genes is a part of Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG-I) project. From the viewpoint of comparative genomics, H. lutea has a larger genome size and more specific genes, which indicated acquisition of function bringing better adaption to its environment. DDH analysis demonstrated that H. lutea is a distinctive species, and halophilic features and nitrogen metabolism related genes were discovered in its genome. BioMed Central 2015-01-20 /pmc/articles/PMC4315136/ /pubmed/25678942 http://dx.doi.org/10.1186/1944-3277-10-1 Text en Copyright © 2015 Gao et al.; licensee BioMed Central. http://creativecommons.org/licenses/by/4.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Short Genome Report
Gao, Xiao-Yang
Zhi, Xiao-Yang
Li, Hong-Wei
Zhou, Yu
Lapidus, Alla
Han, James
Haynes, Matthew
Lobos, Elizabeth
Huntemann, Marcel
Pati, Amrita
Ivanova, Natalia N
Mavromatis, Konstantinos
Tindall, Brian J
Markowitz, Victor
Woyke, Tanja
Klenk, Hans-Peter
Kyrpides, Nikos C
Li, Wen-Jun
Draft genome sequence of Halomonas lutea strain YIM 91125(T) (DSM 23508(T)) isolated from the alkaline Lake Ebinur in Northwest China
title Draft genome sequence of Halomonas lutea strain YIM 91125(T) (DSM 23508(T)) isolated from the alkaline Lake Ebinur in Northwest China
title_full Draft genome sequence of Halomonas lutea strain YIM 91125(T) (DSM 23508(T)) isolated from the alkaline Lake Ebinur in Northwest China
title_fullStr Draft genome sequence of Halomonas lutea strain YIM 91125(T) (DSM 23508(T)) isolated from the alkaline Lake Ebinur in Northwest China
title_full_unstemmed Draft genome sequence of Halomonas lutea strain YIM 91125(T) (DSM 23508(T)) isolated from the alkaline Lake Ebinur in Northwest China
title_short Draft genome sequence of Halomonas lutea strain YIM 91125(T) (DSM 23508(T)) isolated from the alkaline Lake Ebinur in Northwest China
title_sort draft genome sequence of halomonas lutea strain yim 91125(t) (dsm 23508(t)) isolated from the alkaline lake ebinur in northwest china
topic Short Genome Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4315136/
https://www.ncbi.nlm.nih.gov/pubmed/25678942
http://dx.doi.org/10.1186/1944-3277-10-1
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