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Genetic polymorphism analyses of 30 InDels in Chinese Xibe ethnic group and its population genetic differentiations with other groups

In the present study, we obtained population genetic data and forensic parameters of 30 InDel loci in Chinese Xibe ethnic group from northwestern China and studied the genetic relationships between the studied Xibe group and other reference groups. The observed heterozygosities ranged from 0.1704 at...

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Autores principales: Meng, Hao-Tian, Zhang, Yu-Dang, Shen, Chun-Mei, Yuan, Guo-Lian, Yang, Chun-Hua, Jin, Rui, Yan, Jiang-Wei, Wang, Hong-Dan, Liu, Wen-Juan, Jing, Hang, Zhu, Bo-Feng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4317707/
https://www.ncbi.nlm.nih.gov/pubmed/25651970
http://dx.doi.org/10.1038/srep08260
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author Meng, Hao-Tian
Zhang, Yu-Dang
Shen, Chun-Mei
Yuan, Guo-Lian
Yang, Chun-Hua
Jin, Rui
Yan, Jiang-Wei
Wang, Hong-Dan
Liu, Wen-Juan
Jing, Hang
Zhu, Bo-Feng
author_facet Meng, Hao-Tian
Zhang, Yu-Dang
Shen, Chun-Mei
Yuan, Guo-Lian
Yang, Chun-Hua
Jin, Rui
Yan, Jiang-Wei
Wang, Hong-Dan
Liu, Wen-Juan
Jing, Hang
Zhu, Bo-Feng
author_sort Meng, Hao-Tian
collection PubMed
description In the present study, we obtained population genetic data and forensic parameters of 30 InDel loci in Chinese Xibe ethnic group from northwestern China and studied the genetic relationships between the studied Xibe group and other reference groups. The observed heterozygosities ranged from 0.1704 at HLD118 locus to 0.5247 at HLD92 locus while the expected heterozygosities ranged from 0.1559 at HLD118 locus to 0.4997 at HLD101 locus. The cumulative power of exclusion and total probability of discrimination power in the studied group were 0.9867 and 0.9999999999902 for the 30 loci, respectively. Analyses of structure, PCA, interpopulation differentiations and phylogenetic tree revealed that the Xibe group had close genetic relationships with South Korean, Beijing Han and Guangdong Han groups. The results indicated that these 30 loci should only be used as a complement for autosomal STRs in paternity cases but could provide an acceptable level of discrimination in forensic identification cases in the studied Xibe group. Further studies should be conducted for better understanding of the Xibe genetic background.
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spelling pubmed-43177072015-02-13 Genetic polymorphism analyses of 30 InDels in Chinese Xibe ethnic group and its population genetic differentiations with other groups Meng, Hao-Tian Zhang, Yu-Dang Shen, Chun-Mei Yuan, Guo-Lian Yang, Chun-Hua Jin, Rui Yan, Jiang-Wei Wang, Hong-Dan Liu, Wen-Juan Jing, Hang Zhu, Bo-Feng Sci Rep Article In the present study, we obtained population genetic data and forensic parameters of 30 InDel loci in Chinese Xibe ethnic group from northwestern China and studied the genetic relationships between the studied Xibe group and other reference groups. The observed heterozygosities ranged from 0.1704 at HLD118 locus to 0.5247 at HLD92 locus while the expected heterozygosities ranged from 0.1559 at HLD118 locus to 0.4997 at HLD101 locus. The cumulative power of exclusion and total probability of discrimination power in the studied group were 0.9867 and 0.9999999999902 for the 30 loci, respectively. Analyses of structure, PCA, interpopulation differentiations and phylogenetic tree revealed that the Xibe group had close genetic relationships with South Korean, Beijing Han and Guangdong Han groups. The results indicated that these 30 loci should only be used as a complement for autosomal STRs in paternity cases but could provide an acceptable level of discrimination in forensic identification cases in the studied Xibe group. Further studies should be conducted for better understanding of the Xibe genetic background. Nature Publishing Group 2015-02-05 /pmc/articles/PMC4317707/ /pubmed/25651970 http://dx.doi.org/10.1038/srep08260 Text en Copyright © 2015, Macmillan Publishers Limited. All rights reserved http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article's Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder in order to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/
spellingShingle Article
Meng, Hao-Tian
Zhang, Yu-Dang
Shen, Chun-Mei
Yuan, Guo-Lian
Yang, Chun-Hua
Jin, Rui
Yan, Jiang-Wei
Wang, Hong-Dan
Liu, Wen-Juan
Jing, Hang
Zhu, Bo-Feng
Genetic polymorphism analyses of 30 InDels in Chinese Xibe ethnic group and its population genetic differentiations with other groups
title Genetic polymorphism analyses of 30 InDels in Chinese Xibe ethnic group and its population genetic differentiations with other groups
title_full Genetic polymorphism analyses of 30 InDels in Chinese Xibe ethnic group and its population genetic differentiations with other groups
title_fullStr Genetic polymorphism analyses of 30 InDels in Chinese Xibe ethnic group and its population genetic differentiations with other groups
title_full_unstemmed Genetic polymorphism analyses of 30 InDels in Chinese Xibe ethnic group and its population genetic differentiations with other groups
title_short Genetic polymorphism analyses of 30 InDels in Chinese Xibe ethnic group and its population genetic differentiations with other groups
title_sort genetic polymorphism analyses of 30 indels in chinese xibe ethnic group and its population genetic differentiations with other groups
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4317707/
https://www.ncbi.nlm.nih.gov/pubmed/25651970
http://dx.doi.org/10.1038/srep08260
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