Toward better benchmarking: challenge-based methods assessment in cancer genomics

Rapid technological development has created an urgent need for improved evaluation of algorithms for the analysis of cancer genomics data. We outline how challenge-based assessment may help fill this gap by leveraging crowd-sourcing to distribute effort and reduce bias.

Detalles Bibliográficos
Autores principales: Boutros, Paul C, Margolin, Adam A, Stuart, Joshua M, Califano, Andrea, Stolovitzky, Gustavo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2014
Materias:
Opinion
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4318527/
https://www.ncbi.nlm.nih.gov/pubmed/25314947
http://dx.doi.org/10.1186/s13059-014-0462-7
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author Boutros, Paul C
Margolin, Adam A
Stuart, Joshua M
Califano, Andrea
Stolovitzky, Gustavo
author_facet Boutros, Paul C
Margolin, Adam A
Stuart, Joshua M
Califano, Andrea
Stolovitzky, Gustavo
author_sort Boutros, Paul C
collection PubMed
description Rapid technological development has created an urgent need for improved evaluation of algorithms for the analysis of cancer genomics data. We outline how challenge-based assessment may help fill this gap by leveraging crowd-sourcing to distribute effort and reduce bias.
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spelling pubmed-43185272015-02-06 Toward better benchmarking: challenge-based methods assessment in cancer genomics Boutros, Paul C Margolin, Adam A Stuart, Joshua M Califano, Andrea Stolovitzky, Gustavo Genome Biol Opinion Rapid technological development has created an urgent need for improved evaluation of algorithms for the analysis of cancer genomics data. We outline how challenge-based assessment may help fill this gap by leveraging crowd-sourcing to distribute effort and reduce bias. BioMed Central 2014-09-17 2014 /pmc/articles/PMC4318527/ /pubmed/25314947 http://dx.doi.org/10.1186/s13059-014-0462-7 Text en © Boutros et al.; licensee BioMed Central Ltd. 2014 The licensee has exclusive rights to distribute this article, in any medium, for 12 months following its publication. After this time, the article is available under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Opinion
Boutros, Paul C
Margolin, Adam A
Stuart, Joshua M
Califano, Andrea
Stolovitzky, Gustavo
Toward better benchmarking: challenge-based methods assessment in cancer genomics
title Toward better benchmarking: challenge-based methods assessment in cancer genomics
title_full Toward better benchmarking: challenge-based methods assessment in cancer genomics
title_fullStr Toward better benchmarking: challenge-based methods assessment in cancer genomics
title_full_unstemmed Toward better benchmarking: challenge-based methods assessment in cancer genomics
title_short Toward better benchmarking: challenge-based methods assessment in cancer genomics
title_sort toward better benchmarking: challenge-based methods assessment in cancer genomics
topic Opinion
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4318527/
https://www.ncbi.nlm.nih.gov/pubmed/25314947
http://dx.doi.org/10.1186/s13059-014-0462-7
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AT califanoandrea towardbetterbenchmarkingchallengebasedmethodsassessmentincancergenomics
AT stolovitzkygustavo towardbetterbenchmarkingchallengebasedmethodsassessmentincancergenomics

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