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A prediction model for Clostridium difficile recurrence

BACKGROUND: Clostridium difficile infection (CDI) is a growing problem in the community and hospital setting. Its incidence has been on the rise over the past two decades, and it is quickly becoming a major concern for the health care system. High rate of recurrence is one of the major hurdles in th...

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Autores principales: LaBarbera, Francis D., Nikiforov, Ivan, Parvathenani, Arvin, Pramil, Varsha, Gorrepati, Subhash
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Co-Action Publishing 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4318823/
https://www.ncbi.nlm.nih.gov/pubmed/25656667
http://dx.doi.org/10.3402/jchimp.v5.26033
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author LaBarbera, Francis D.
Nikiforov, Ivan
Parvathenani, Arvin
Pramil, Varsha
Gorrepati, Subhash
author_facet LaBarbera, Francis D.
Nikiforov, Ivan
Parvathenani, Arvin
Pramil, Varsha
Gorrepati, Subhash
author_sort LaBarbera, Francis D.
collection PubMed
description BACKGROUND: Clostridium difficile infection (CDI) is a growing problem in the community and hospital setting. Its incidence has been on the rise over the past two decades, and it is quickly becoming a major concern for the health care system. High rate of recurrence is one of the major hurdles in the successful treatment of C. difficile infection. There have been few studies that have looked at patterns of recurrence. The studies currently available have shown a number of risk factors associated with C. difficile recurrence (CDR); however, there is little consensus on the impact of most of the identified risk factors. METHODS: Our study was a retrospective chart review of 198 patients diagnosed with CDI via Polymerase Chain Reaction (PCR) from January 2009 to Jun 2013. In our study, we decided to use a machine learning algorithm called the Random Forest (RF) to analyze all of the factors proposed to be associated with CDR. This model is capable of making predictions based on a large number of variables, and has outperformed numerous other models and statistical methods. RESULTS: We came up with a model that was able to accurately predict the CDR with a sensitivity of 83.3%, specificity of 63.1%, and area under curve of 82.6%. Like other similar studies that have used the RF model, we also had very impressive results. CONCLUSIONS: We hope that in the future, machine learning algorithms, such as the RF, will see a wider application.
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spelling pubmed-43188232015-02-23 A prediction model for Clostridium difficile recurrence LaBarbera, Francis D. Nikiforov, Ivan Parvathenani, Arvin Pramil, Varsha Gorrepati, Subhash J Community Hosp Intern Med Perspect Research Article BACKGROUND: Clostridium difficile infection (CDI) is a growing problem in the community and hospital setting. Its incidence has been on the rise over the past two decades, and it is quickly becoming a major concern for the health care system. High rate of recurrence is one of the major hurdles in the successful treatment of C. difficile infection. There have been few studies that have looked at patterns of recurrence. The studies currently available have shown a number of risk factors associated with C. difficile recurrence (CDR); however, there is little consensus on the impact of most of the identified risk factors. METHODS: Our study was a retrospective chart review of 198 patients diagnosed with CDI via Polymerase Chain Reaction (PCR) from January 2009 to Jun 2013. In our study, we decided to use a machine learning algorithm called the Random Forest (RF) to analyze all of the factors proposed to be associated with CDR. This model is capable of making predictions based on a large number of variables, and has outperformed numerous other models and statistical methods. RESULTS: We came up with a model that was able to accurately predict the CDR with a sensitivity of 83.3%, specificity of 63.1%, and area under curve of 82.6%. Like other similar studies that have used the RF model, we also had very impressive results. CONCLUSIONS: We hope that in the future, machine learning algorithms, such as the RF, will see a wider application. Co-Action Publishing 2015-02-03 /pmc/articles/PMC4318823/ /pubmed/25656667 http://dx.doi.org/10.3402/jchimp.v5.26033 Text en © 2015 Francis D. LaBarbera et al. http://creativecommons.org/licenses/by-nc-nd/3.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution-Noncommercial 3.0 Unported License, permitting all non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
LaBarbera, Francis D.
Nikiforov, Ivan
Parvathenani, Arvin
Pramil, Varsha
Gorrepati, Subhash
A prediction model for Clostridium difficile recurrence
title A prediction model for Clostridium difficile recurrence
title_full A prediction model for Clostridium difficile recurrence
title_fullStr A prediction model for Clostridium difficile recurrence
title_full_unstemmed A prediction model for Clostridium difficile recurrence
title_short A prediction model for Clostridium difficile recurrence
title_sort prediction model for clostridium difficile recurrence
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4318823/
https://www.ncbi.nlm.nih.gov/pubmed/25656667
http://dx.doi.org/10.3402/jchimp.v5.26033
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