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A certified plasmid reference material for the standardisation of BCR–ABL1 mRNA quantification by real-time quantitative PCR

Serial quantification of BCR–ABL1 mRNA is an important therapeutic indicator in chronic myeloid leukaemia, but there is a substantial variation in results reported by different laboratories. To improve comparability, an internationally accepted plasmid certified reference material (CRM) was develope...

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Autores principales: White, H, Deprez, L, Corbisier, P, Hall, V, Lin, F, Mazoua, S, Trapmann, S, Aggerholm, A, Andrikovics, H, Akiki, S, Barbany, G, Boeckx, N, Bench, A, Catherwood, M, Cayuela, J-M, Chudleigh, S, Clench, T, Colomer, D, Daraio, F, Dulucq, S, Farrugia, J, Fletcher, L, Foroni, L, Ganderton, R, Gerrard, G, Gineikienė, E, Hayette, S, El Housni, H, Izzo, B, Jansson, M, Johnels, P, Jurcek, T, Kairisto, V, Kizilors, A, Kim, D-W, Lange, T, Lion, T, Polakova, K M, Martinelli, G, McCarron, S, Merle, P A, Milner, B, Mitterbauer-Hohendanner, G, Nagar, M, Nickless, G, Nomdedéu, J, Nymoen, D A, Leibundgut, E O, Ozbek, U, Pajič, T, Pfeifer, H, Preudhomme, C, Raudsepp, K, Romeo, G, Sacha, T, Talmaci, R, Touloumenidou, T, Van der Velden, V H J, Waits, P, Wang, L, Wilkinson, E, Wilson, G, Wren, D, Zadro, R, Ziermann, J, Zoi, K, Müller, M C, Hochhaus, A, Schimmel, H, Cross, N C P, Emons, H
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4320294/
https://www.ncbi.nlm.nih.gov/pubmed/25036192
http://dx.doi.org/10.1038/leu.2014.217
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author White, H
Deprez, L
Corbisier, P
Hall, V
Lin, F
Mazoua, S
Trapmann, S
Aggerholm, A
Andrikovics, H
Akiki, S
Barbany, G
Boeckx, N
Bench, A
Catherwood, M
Cayuela, J-M
Chudleigh, S
Clench, T
Colomer, D
Daraio, F
Dulucq, S
Farrugia, J
Fletcher, L
Foroni, L
Ganderton, R
Gerrard, G
Gineikienė, E
Hayette, S
El Housni, H
Izzo, B
Jansson, M
Johnels, P
Jurcek, T
Kairisto, V
Kizilors, A
Kim, D-W
Lange, T
Lion, T
Polakova, K M
Martinelli, G
McCarron, S
Merle, P A
Milner, B
Mitterbauer-Hohendanner, G
Nagar, M
Nickless, G
Nomdedéu, J
Nymoen, D A
Leibundgut, E O
Ozbek, U
Pajič, T
Pfeifer, H
Preudhomme, C
Raudsepp, K
Romeo, G
Sacha, T
Talmaci, R
Touloumenidou, T
Van der Velden, V H J
Waits, P
Wang, L
Wilkinson, E
Wilson, G
Wren, D
Zadro, R
Ziermann, J
Zoi, K
Müller, M C
Hochhaus, A
Schimmel, H
Cross, N C P
Emons, H
author_facet White, H
Deprez, L
Corbisier, P
Hall, V
Lin, F
Mazoua, S
Trapmann, S
Aggerholm, A
Andrikovics, H
Akiki, S
Barbany, G
Boeckx, N
Bench, A
Catherwood, M
Cayuela, J-M
Chudleigh, S
Clench, T
Colomer, D
Daraio, F
Dulucq, S
Farrugia, J
Fletcher, L
Foroni, L
Ganderton, R
Gerrard, G
Gineikienė, E
Hayette, S
El Housni, H
Izzo, B
Jansson, M
Johnels, P
Jurcek, T
Kairisto, V
Kizilors, A
Kim, D-W
Lange, T
Lion, T
Polakova, K M
Martinelli, G
McCarron, S
Merle, P A
Milner, B
Mitterbauer-Hohendanner, G
Nagar, M
Nickless, G
Nomdedéu, J
Nymoen, D A
Leibundgut, E O
Ozbek, U
Pajič, T
Pfeifer, H
Preudhomme, C
Raudsepp, K
Romeo, G
Sacha, T
Talmaci, R
Touloumenidou, T
Van der Velden, V H J
Waits, P
Wang, L
Wilkinson, E
Wilson, G
Wren, D
Zadro, R
Ziermann, J
Zoi, K
Müller, M C
Hochhaus, A
Schimmel, H
Cross, N C P
Emons, H
author_sort White, H
collection PubMed
description Serial quantification of BCR–ABL1 mRNA is an important therapeutic indicator in chronic myeloid leukaemia, but there is a substantial variation in results reported by different laboratories. To improve comparability, an internationally accepted plasmid certified reference material (CRM) was developed according to ISO Guide 34:2009. Fragments of BCR–ABL1 (e14a2 mRNA fusion), BCR and GUSB transcripts were amplified and cloned into pUC18 to yield plasmid pIRMM0099. Six different linearised plasmid solutions were produced with the following copy number concentrations, assigned by digital PCR, and expanded uncertainties: 1.08±0.13 × 10(6), 1.08±0.11 × 10(5), 1.03±0.10 × 10(4), 1.02±0.09 × 10(3), 1.04±0.10 × 10(2) and 10.0±1.5 copies/μl. The certification of the material for the number of specific DNA fragments per plasmid, copy number concentration of the plasmid solutions and the assessment of inter-unit heterogeneity and stability were performed according to ISO Guide 35:2006. Two suitability studies performed by 63 BCR–ABL1 testing laboratories demonstrated that this set of 6 plasmid CRMs can help to standardise a number of measured transcripts of e14a2 BCR–ABL1 and three control genes (ABL1, BCR and GUSB). The set of six plasmid CRMs is distributed worldwide by the Institute for Reference Materials and Measurements (Belgium) and its authorised distributors (https://ec.europa.eu/jrc/en/reference-materials/catalogue/; CRM code ERM-AD623a-f).
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spelling pubmed-43202942015-02-17 A certified plasmid reference material for the standardisation of BCR–ABL1 mRNA quantification by real-time quantitative PCR White, H Deprez, L Corbisier, P Hall, V Lin, F Mazoua, S Trapmann, S Aggerholm, A Andrikovics, H Akiki, S Barbany, G Boeckx, N Bench, A Catherwood, M Cayuela, J-M Chudleigh, S Clench, T Colomer, D Daraio, F Dulucq, S Farrugia, J Fletcher, L Foroni, L Ganderton, R Gerrard, G Gineikienė, E Hayette, S El Housni, H Izzo, B Jansson, M Johnels, P Jurcek, T Kairisto, V Kizilors, A Kim, D-W Lange, T Lion, T Polakova, K M Martinelli, G McCarron, S Merle, P A Milner, B Mitterbauer-Hohendanner, G Nagar, M Nickless, G Nomdedéu, J Nymoen, D A Leibundgut, E O Ozbek, U Pajič, T Pfeifer, H Preudhomme, C Raudsepp, K Romeo, G Sacha, T Talmaci, R Touloumenidou, T Van der Velden, V H J Waits, P Wang, L Wilkinson, E Wilson, G Wren, D Zadro, R Ziermann, J Zoi, K Müller, M C Hochhaus, A Schimmel, H Cross, N C P Emons, H Leukemia Original Article Serial quantification of BCR–ABL1 mRNA is an important therapeutic indicator in chronic myeloid leukaemia, but there is a substantial variation in results reported by different laboratories. To improve comparability, an internationally accepted plasmid certified reference material (CRM) was developed according to ISO Guide 34:2009. Fragments of BCR–ABL1 (e14a2 mRNA fusion), BCR and GUSB transcripts were amplified and cloned into pUC18 to yield plasmid pIRMM0099. Six different linearised plasmid solutions were produced with the following copy number concentrations, assigned by digital PCR, and expanded uncertainties: 1.08±0.13 × 10(6), 1.08±0.11 × 10(5), 1.03±0.10 × 10(4), 1.02±0.09 × 10(3), 1.04±0.10 × 10(2) and 10.0±1.5 copies/μl. The certification of the material for the number of specific DNA fragments per plasmid, copy number concentration of the plasmid solutions and the assessment of inter-unit heterogeneity and stability were performed according to ISO Guide 35:2006. Two suitability studies performed by 63 BCR–ABL1 testing laboratories demonstrated that this set of 6 plasmid CRMs can help to standardise a number of measured transcripts of e14a2 BCR–ABL1 and three control genes (ABL1, BCR and GUSB). The set of six plasmid CRMs is distributed worldwide by the Institute for Reference Materials and Measurements (Belgium) and its authorised distributors (https://ec.europa.eu/jrc/en/reference-materials/catalogue/; CRM code ERM-AD623a-f). Nature Publishing Group 2015-02 2014-08-12 /pmc/articles/PMC4320294/ /pubmed/25036192 http://dx.doi.org/10.1038/leu.2014.217 Text en Copyright © 2015 Macmillan Publishers Limited http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article's Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/
spellingShingle Original Article
White, H
Deprez, L
Corbisier, P
Hall, V
Lin, F
Mazoua, S
Trapmann, S
Aggerholm, A
Andrikovics, H
Akiki, S
Barbany, G
Boeckx, N
Bench, A
Catherwood, M
Cayuela, J-M
Chudleigh, S
Clench, T
Colomer, D
Daraio, F
Dulucq, S
Farrugia, J
Fletcher, L
Foroni, L
Ganderton, R
Gerrard, G
Gineikienė, E
Hayette, S
El Housni, H
Izzo, B
Jansson, M
Johnels, P
Jurcek, T
Kairisto, V
Kizilors, A
Kim, D-W
Lange, T
Lion, T
Polakova, K M
Martinelli, G
McCarron, S
Merle, P A
Milner, B
Mitterbauer-Hohendanner, G
Nagar, M
Nickless, G
Nomdedéu, J
Nymoen, D A
Leibundgut, E O
Ozbek, U
Pajič, T
Pfeifer, H
Preudhomme, C
Raudsepp, K
Romeo, G
Sacha, T
Talmaci, R
Touloumenidou, T
Van der Velden, V H J
Waits, P
Wang, L
Wilkinson, E
Wilson, G
Wren, D
Zadro, R
Ziermann, J
Zoi, K
Müller, M C
Hochhaus, A
Schimmel, H
Cross, N C P
Emons, H
A certified plasmid reference material for the standardisation of BCR–ABL1 mRNA quantification by real-time quantitative PCR
title A certified plasmid reference material for the standardisation of BCR–ABL1 mRNA quantification by real-time quantitative PCR
title_full A certified plasmid reference material for the standardisation of BCR–ABL1 mRNA quantification by real-time quantitative PCR
title_fullStr A certified plasmid reference material for the standardisation of BCR–ABL1 mRNA quantification by real-time quantitative PCR
title_full_unstemmed A certified plasmid reference material for the standardisation of BCR–ABL1 mRNA quantification by real-time quantitative PCR
title_short A certified plasmid reference material for the standardisation of BCR–ABL1 mRNA quantification by real-time quantitative PCR
title_sort certified plasmid reference material for the standardisation of bcr–abl1 mrna quantification by real-time quantitative pcr
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4320294/
https://www.ncbi.nlm.nih.gov/pubmed/25036192
http://dx.doi.org/10.1038/leu.2014.217
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AT wilkinsone certifiedplasmidreferencematerialforthestandardisationofbcrabl1mrnaquantificationbyrealtimequantitativepcr
AT wilsong certifiedplasmidreferencematerialforthestandardisationofbcrabl1mrnaquantificationbyrealtimequantitativepcr
AT wrend certifiedplasmidreferencematerialforthestandardisationofbcrabl1mrnaquantificationbyrealtimequantitativepcr
AT zadror certifiedplasmidreferencematerialforthestandardisationofbcrabl1mrnaquantificationbyrealtimequantitativepcr
AT ziermannj certifiedplasmidreferencematerialforthestandardisationofbcrabl1mrnaquantificationbyrealtimequantitativepcr
AT zoik certifiedplasmidreferencematerialforthestandardisationofbcrabl1mrnaquantificationbyrealtimequantitativepcr
AT mullermc certifiedplasmidreferencematerialforthestandardisationofbcrabl1mrnaquantificationbyrealtimequantitativepcr
AT hochhausa certifiedplasmidreferencematerialforthestandardisationofbcrabl1mrnaquantificationbyrealtimequantitativepcr
AT schimmelh certifiedplasmidreferencematerialforthestandardisationofbcrabl1mrnaquantificationbyrealtimequantitativepcr
AT crossncp certifiedplasmidreferencematerialforthestandardisationofbcrabl1mrnaquantificationbyrealtimequantitativepcr
AT emonsh certifiedplasmidreferencematerialforthestandardisationofbcrabl1mrnaquantificationbyrealtimequantitativepcr