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Loading Dynamics of a Sliding DNA Clamp**
Sliding DNA clamps are loaded at a ss/dsDNA junction by a clamp loader that depends on ATP binding for clamp opening. Sequential ATP hydrolysis results in closure of the clamp so that it completely encircles and diffuses on dsDNA. We followed events during loading of an E. coli β clamp in real time...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
WILEY-VCH Verlag
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4320747/ https://www.ncbi.nlm.nih.gov/pubmed/24854225 http://dx.doi.org/10.1002/anie.201403063 |
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author | Cho, Won-Ki Jergic, Slobodan Kim, Daehyung Dixon, Nicholas E Lee, Jong-Bong |
author_facet | Cho, Won-Ki Jergic, Slobodan Kim, Daehyung Dixon, Nicholas E Lee, Jong-Bong |
author_sort | Cho, Won-Ki |
collection | PubMed |
description | Sliding DNA clamps are loaded at a ss/dsDNA junction by a clamp loader that depends on ATP binding for clamp opening. Sequential ATP hydrolysis results in closure of the clamp so that it completely encircles and diffuses on dsDNA. We followed events during loading of an E. coli β clamp in real time by using single-molecule FRET (smFRET). Three successive FRET states were retained for 0.3 s, 0.7 s, and 9 min: Hydrolysis of the first ATP molecule by the γ clamp loader resulted in closure of the clamp in 0.3 s, and after 0.7 s in the closed conformation, the clamp was released to diffuse on the dsDNA for at least 9 min. An additional single-molecule polarization study revealed that the interfacial domain of the clamp rotated in plane by approximately 8° during clamp closure. The single-molecule polarization and FRET studies thus revealed the real-time dynamics of the ATP-hydrolysis-dependent 3D conformational change of the β clamp during loading at a ss/dsDNA junction. |
format | Online Article Text |
id | pubmed-4320747 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | WILEY-VCH Verlag |
record_format | MEDLINE/PubMed |
spelling | pubmed-43207472015-02-13 Loading Dynamics of a Sliding DNA Clamp** Cho, Won-Ki Jergic, Slobodan Kim, Daehyung Dixon, Nicholas E Lee, Jong-Bong Angew Chem Int Ed Engl Communications Sliding DNA clamps are loaded at a ss/dsDNA junction by a clamp loader that depends on ATP binding for clamp opening. Sequential ATP hydrolysis results in closure of the clamp so that it completely encircles and diffuses on dsDNA. We followed events during loading of an E. coli β clamp in real time by using single-molecule FRET (smFRET). Three successive FRET states were retained for 0.3 s, 0.7 s, and 9 min: Hydrolysis of the first ATP molecule by the γ clamp loader resulted in closure of the clamp in 0.3 s, and after 0.7 s in the closed conformation, the clamp was released to diffuse on the dsDNA for at least 9 min. An additional single-molecule polarization study revealed that the interfacial domain of the clamp rotated in plane by approximately 8° during clamp closure. The single-molecule polarization and FRET studies thus revealed the real-time dynamics of the ATP-hydrolysis-dependent 3D conformational change of the β clamp during loading at a ss/dsDNA junction. WILEY-VCH Verlag 2014-06-23 2014-05-22 /pmc/articles/PMC4320747/ /pubmed/24854225 http://dx.doi.org/10.1002/anie.201403063 Text en © 2014 The Authors. Published by Wiley-VCH Verlag GmbH & Co. KGaA. http://creativecommons.org/licenses/by/4.0/ This is an open access article under the terms of the Creative Commons Attribution Non-Commercial NoDerivs License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non-commercial and no modifications or adaptations are made. |
spellingShingle | Communications Cho, Won-Ki Jergic, Slobodan Kim, Daehyung Dixon, Nicholas E Lee, Jong-Bong Loading Dynamics of a Sliding DNA Clamp** |
title | Loading Dynamics of a Sliding DNA Clamp** |
title_full | Loading Dynamics of a Sliding DNA Clamp** |
title_fullStr | Loading Dynamics of a Sliding DNA Clamp** |
title_full_unstemmed | Loading Dynamics of a Sliding DNA Clamp** |
title_short | Loading Dynamics of a Sliding DNA Clamp** |
title_sort | loading dynamics of a sliding dna clamp** |
topic | Communications |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4320747/ https://www.ncbi.nlm.nih.gov/pubmed/24854225 http://dx.doi.org/10.1002/anie.201403063 |
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