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Loading Dynamics of a Sliding DNA Clamp**

Sliding DNA clamps are loaded at a ss/dsDNA junction by a clamp loader that depends on ATP binding for clamp opening. Sequential ATP hydrolysis results in closure of the clamp so that it completely encircles and diffuses on dsDNA. We followed events during loading of an E. coli β clamp in real time...

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Autores principales: Cho, Won-Ki, Jergic, Slobodan, Kim, Daehyung, Dixon, Nicholas E, Lee, Jong-Bong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: WILEY-VCH Verlag 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4320747/
https://www.ncbi.nlm.nih.gov/pubmed/24854225
http://dx.doi.org/10.1002/anie.201403063
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author Cho, Won-Ki
Jergic, Slobodan
Kim, Daehyung
Dixon, Nicholas E
Lee, Jong-Bong
author_facet Cho, Won-Ki
Jergic, Slobodan
Kim, Daehyung
Dixon, Nicholas E
Lee, Jong-Bong
author_sort Cho, Won-Ki
collection PubMed
description Sliding DNA clamps are loaded at a ss/dsDNA junction by a clamp loader that depends on ATP binding for clamp opening. Sequential ATP hydrolysis results in closure of the clamp so that it completely encircles and diffuses on dsDNA. We followed events during loading of an E. coli β clamp in real time by using single-molecule FRET (smFRET). Three successive FRET states were retained for 0.3 s, 0.7 s, and 9 min: Hydrolysis of the first ATP molecule by the γ clamp loader resulted in closure of the clamp in 0.3 s, and after 0.7 s in the closed conformation, the clamp was released to diffuse on the dsDNA for at least 9 min. An additional single-molecule polarization study revealed that the interfacial domain of the clamp rotated in plane by approximately 8° during clamp closure. The single-molecule polarization and FRET studies thus revealed the real-time dynamics of the ATP-hydrolysis-dependent 3D conformational change of the β clamp during loading at a ss/dsDNA junction.
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spelling pubmed-43207472015-02-13 Loading Dynamics of a Sliding DNA Clamp** Cho, Won-Ki Jergic, Slobodan Kim, Daehyung Dixon, Nicholas E Lee, Jong-Bong Angew Chem Int Ed Engl Communications Sliding DNA clamps are loaded at a ss/dsDNA junction by a clamp loader that depends on ATP binding for clamp opening. Sequential ATP hydrolysis results in closure of the clamp so that it completely encircles and diffuses on dsDNA. We followed events during loading of an E. coli β clamp in real time by using single-molecule FRET (smFRET). Three successive FRET states were retained for 0.3 s, 0.7 s, and 9 min: Hydrolysis of the first ATP molecule by the γ clamp loader resulted in closure of the clamp in 0.3 s, and after 0.7 s in the closed conformation, the clamp was released to diffuse on the dsDNA for at least 9 min. An additional single-molecule polarization study revealed that the interfacial domain of the clamp rotated in plane by approximately 8° during clamp closure. The single-molecule polarization and FRET studies thus revealed the real-time dynamics of the ATP-hydrolysis-dependent 3D conformational change of the β clamp during loading at a ss/dsDNA junction. WILEY-VCH Verlag 2014-06-23 2014-05-22 /pmc/articles/PMC4320747/ /pubmed/24854225 http://dx.doi.org/10.1002/anie.201403063 Text en © 2014 The Authors. Published by Wiley-VCH Verlag GmbH & Co. KGaA. http://creativecommons.org/licenses/by/4.0/ This is an open access article under the terms of the Creative Commons Attribution Non-Commercial NoDerivs License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non-commercial and no modifications or adaptations are made.
spellingShingle Communications
Cho, Won-Ki
Jergic, Slobodan
Kim, Daehyung
Dixon, Nicholas E
Lee, Jong-Bong
Loading Dynamics of a Sliding DNA Clamp**
title Loading Dynamics of a Sliding DNA Clamp**
title_full Loading Dynamics of a Sliding DNA Clamp**
title_fullStr Loading Dynamics of a Sliding DNA Clamp**
title_full_unstemmed Loading Dynamics of a Sliding DNA Clamp**
title_short Loading Dynamics of a Sliding DNA Clamp**
title_sort loading dynamics of a sliding dna clamp**
topic Communications
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4320747/
https://www.ncbi.nlm.nih.gov/pubmed/24854225
http://dx.doi.org/10.1002/anie.201403063
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