Cargando…

HPOSim: An R Package for Phenotypic Similarity Measure and Enrichment Analysis Based on the Human Phenotype Ontology

BACKGROUND: Phenotypic features associated with genes and diseases play an important role in disease-related studies and most of the available methods focus solely on the Online Mendelian Inheritance in Man (OMIM) database without considering the controlled vocabulary. The Human Phenotype Ontology (...

Descripción completa

Detalles Bibliográficos
Autores principales:	Deng, Yue, Gao, Lin, Wang, Bingbo, Guo, Xingli
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Public Library of Science 2015
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4321842/ https://www.ncbi.nlm.nih.gov/pubmed/25664462 http://dx.doi.org/10.1371/journal.pone.0115692

Ejemplares similares

A new method to measure the semantic similarity from query phenotypic abnormalities to diseases based on the human phenotype ontology
por: Gong, Xiaofeng, et al.
Publicado: (2018)

DOSim: An R package for similarity between diseases based on Disease Ontology
por: Li, Jiang, et al.
Publicado: (2011)

A new synonym-substitution method to enrich the human phenotype ontology
por: Taboada, Maria, et al.
Publicado: (2017)

Clinical phenotype-based gene prioritization: an initial study using semantic similarity and the human phenotype ontology
por: Masino, Aaron J, et al.
Publicado: (2014)

The Human Phenotype Ontology in 2017
por: Köhler, Sebastian, et al.
Publicado: (2017)

The Human Phenotype Ontology in 2021
por: Köhler, Sebastian, et al.
Publicado: (2020)

Phenotypic Analysis of Clinical Narratives Using Human Phenotype Ontology
por: Shen, Feichen, et al.
Publicado: (2017)

Three Ontologies to Define Phenotype Measurement Data
por: Shimoyama, Mary, et al.
Publicado: (2012)

An ontology for microbial phenotypes
por: Chibucos, Marcus C, et al.
Publicado: (2014)

The Drosophila phenotype ontology
por: Osumi-Sutherland, David, et al.
Publicado: (2013)

Measuring phenotype-phenotype similarity through the interactome
por: Peng, Jiajie, et al.
Publicado: (2018)

ontologyX: a suite of R packages for working with ontological data
por: Greene, Daniel, et al.
Publicado: (2017)

Phenotype annotation with the ontology of microbial phenotypes (OMP)
por: Siegele, Deborah A., et al.
Publicado: (2019)

Gene Ontology Enrichment Improves Performances of Functional Similarity of Genes
por: Liu, Wenting, et al.
Publicado: (2018)

Prenatal phenotyping: A community effort to enhance the Human Phenotype Ontology
por: Dhombres, Ferdinand, et al.
Publicado: (2022)

Phexpo: a package for bidirectional enrichment analysis of phenotypes and chemicals
por: Hawthorne, Christopher, et al.
Publicado: (2020)

Ontologies for the Description of Mouse Phenotypes
por: Gkoutos, G. V., et al.
Publicado: (2004)

The cellular microscopy phenotype ontology
por: Jupp, Simon, et al.
Publicado: (2016)

Diversified Control Paths: A Significant Way Disease Genes Perturb the Human Regulatory Network
por: Wang, Bingbo, et al.
Publicado: (2015)

CompGO: an R package for comparing and visualizing Gene Ontology enrichment differences between DNA binding experiments
por: Waardenberg, Ashley J., et al.
Publicado: (2015)

Matching disease and phenotype ontologies in the ontology alignment evaluation initiative
por: Harrow, Ian, et al.
Publicado: (2017)

OGA: an ontological tool of human phenotypes with genetic associations
por: Herrera-Galeano, Jesus Enrique, et al.
Publicado: (2013)

The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data
por: Köhler, Sebastian, et al.
Publicado: (2014)

The Xenopus phenotype ontology: bridging model organism phenotype data to human health and development
por: Fisher, Malcolm E., et al.
Publicado: (2022)

Using ontologies to describe mouse phenotypes
por: Gkoutos, Georgios V, et al.
Publicado: (2005)

Phenex: Ontological Annotation of Phenotypic Diversity
por: Balhoff, James P., et al.
Publicado: (2010)

Interoperability between phenotype and anatomy ontologies
por: Hoehndorf, Robert, et al.
Publicado: (2010)

FYPO: the fission yeast phenotype ontology
por: Harris, Midori A., et al.
Publicado: (2013)

Special issue on bio-ontologies and phenotypes
por: Soldatova, Larisa N., et al.
Publicado: (2015)

Integrating phenotype ontologies with PhenomeNET
por: Rodríguez-García, Miguel Ángel, et al.
Publicado: (2017)

Phenomics Research on Coronary Heart Disease Based on Human Phenotype Ontology
por: Shi, Qi, et al.
Publicado: (2014)

From Ontology to Semantic Similarity: Calculation of Ontology-Based Semantic Similarity
por: Gan, Mingxin, et al.
Publicado: (2013)

Erratum to: ‘CompGO: an R package for comparing and visualizing Gene Ontology enrichment differences between DNA binding experiments’
por: Waardenberg, Ashley J., et al.
Publicado: (2016)

The Human Phenotype Ontology: Semantic Unification of Common and Rare Disease
por: Groza, Tudor, et al.
Publicado: (2015)

Expansion of the Human Phenotype Ontology (HPO) knowledge base and resources
por: Köhler, Sebastian, et al.
Publicado: (2019)

Choosing preferable labels for the Japanese translation of the Human Phenotype Ontology
por: Ninomiya, Kota, et al.
Publicado: (2020)

Representing default knowledge in biomedical ontologies: application to the integration of anatomy and phenotype ontologies
por: Hoehndorf, Robert, et al.
Publicado: (2007)

Integrating phenotype ontologies across multiple species
por: Mungall, Christopher J, et al.
Publicado: (2010)

Ontology-based validation and identification of regulatory phenotypes
por: Kulmanov, Maxat, et al.
Publicado: (2018)

The anatomy of phenotype ontologies: principles, properties and applications
por: Gkoutos, Georgios V, et al.
Publicado: (2017)

Cannot write session to /tmp/vufind_sessions/sess_brhm2s096e13mg0d6i79ndir3u