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Local Error Estimates Dramatically Improve the Utility of Homology Models for Solving Crystal Structures by Molecular Replacement

Predicted structures submitted for CASP10 have been evaluated as molecular replacement models against the corresponding sets of structure factor amplitudes. It has been found that the log-likelihood gain score computed for each prediction correlates well with common structure quality indicators but...

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Detalles Bibliográficos
Autores principales: Bunkóczi, Gábor, Wallner, Björn, Read, Randy J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cell Press 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4321884/
https://www.ncbi.nlm.nih.gov/pubmed/25619999
http://dx.doi.org/10.1016/j.str.2014.11.020
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author Bunkóczi, Gábor
Wallner, Björn
Read, Randy J.
author_facet Bunkóczi, Gábor
Wallner, Björn
Read, Randy J.
author_sort Bunkóczi, Gábor
collection PubMed
description Predicted structures submitted for CASP10 have been evaluated as molecular replacement models against the corresponding sets of structure factor amplitudes. It has been found that the log-likelihood gain score computed for each prediction correlates well with common structure quality indicators but is more sensitive when the accuracy of the models is high. In addition, it was observed that using coordinate error estimates submitted by predictors to weight the model can improve its utility in molecular replacement dramatically, and several groups have been identified who reliably provide accurate error estimates that could be used to extend the application of molecular replacement for low-homology cases.
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spelling pubmed-43218842015-02-14 Local Error Estimates Dramatically Improve the Utility of Homology Models for Solving Crystal Structures by Molecular Replacement Bunkóczi, Gábor Wallner, Björn Read, Randy J. Structure Article Predicted structures submitted for CASP10 have been evaluated as molecular replacement models against the corresponding sets of structure factor amplitudes. It has been found that the log-likelihood gain score computed for each prediction correlates well with common structure quality indicators but is more sensitive when the accuracy of the models is high. In addition, it was observed that using coordinate error estimates submitted by predictors to weight the model can improve its utility in molecular replacement dramatically, and several groups have been identified who reliably provide accurate error estimates that could be used to extend the application of molecular replacement for low-homology cases. Cell Press 2015-02-03 /pmc/articles/PMC4321884/ /pubmed/25619999 http://dx.doi.org/10.1016/j.str.2014.11.020 Text en © 2015 The Authors http://creativecommons.org/licenses/by/3.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/3.0/).
spellingShingle Article
Bunkóczi, Gábor
Wallner, Björn
Read, Randy J.
Local Error Estimates Dramatically Improve the Utility of Homology Models for Solving Crystal Structures by Molecular Replacement
title Local Error Estimates Dramatically Improve the Utility of Homology Models for Solving Crystal Structures by Molecular Replacement
title_full Local Error Estimates Dramatically Improve the Utility of Homology Models for Solving Crystal Structures by Molecular Replacement
title_fullStr Local Error Estimates Dramatically Improve the Utility of Homology Models for Solving Crystal Structures by Molecular Replacement
title_full_unstemmed Local Error Estimates Dramatically Improve the Utility of Homology Models for Solving Crystal Structures by Molecular Replacement
title_short Local Error Estimates Dramatically Improve the Utility of Homology Models for Solving Crystal Structures by Molecular Replacement
title_sort local error estimates dramatically improve the utility of homology models for solving crystal structures by molecular replacement
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4321884/
https://www.ncbi.nlm.nih.gov/pubmed/25619999
http://dx.doi.org/10.1016/j.str.2014.11.020
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