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Local Error Estimates Dramatically Improve the Utility of Homology Models for Solving Crystal Structures by Molecular Replacement
Predicted structures submitted for CASP10 have been evaluated as molecular replacement models against the corresponding sets of structure factor amplitudes. It has been found that the log-likelihood gain score computed for each prediction correlates well with common structure quality indicators but...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Cell Press
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4321884/ https://www.ncbi.nlm.nih.gov/pubmed/25619999 http://dx.doi.org/10.1016/j.str.2014.11.020 |
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author | Bunkóczi, Gábor Wallner, Björn Read, Randy J. |
author_facet | Bunkóczi, Gábor Wallner, Björn Read, Randy J. |
author_sort | Bunkóczi, Gábor |
collection | PubMed |
description | Predicted structures submitted for CASP10 have been evaluated as molecular replacement models against the corresponding sets of structure factor amplitudes. It has been found that the log-likelihood gain score computed for each prediction correlates well with common structure quality indicators but is more sensitive when the accuracy of the models is high. In addition, it was observed that using coordinate error estimates submitted by predictors to weight the model can improve its utility in molecular replacement dramatically, and several groups have been identified who reliably provide accurate error estimates that could be used to extend the application of molecular replacement for low-homology cases. |
format | Online Article Text |
id | pubmed-4321884 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Cell Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-43218842015-02-14 Local Error Estimates Dramatically Improve the Utility of Homology Models for Solving Crystal Structures by Molecular Replacement Bunkóczi, Gábor Wallner, Björn Read, Randy J. Structure Article Predicted structures submitted for CASP10 have been evaluated as molecular replacement models against the corresponding sets of structure factor amplitudes. It has been found that the log-likelihood gain score computed for each prediction correlates well with common structure quality indicators but is more sensitive when the accuracy of the models is high. In addition, it was observed that using coordinate error estimates submitted by predictors to weight the model can improve its utility in molecular replacement dramatically, and several groups have been identified who reliably provide accurate error estimates that could be used to extend the application of molecular replacement for low-homology cases. Cell Press 2015-02-03 /pmc/articles/PMC4321884/ /pubmed/25619999 http://dx.doi.org/10.1016/j.str.2014.11.020 Text en © 2015 The Authors http://creativecommons.org/licenses/by/3.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/3.0/). |
spellingShingle | Article Bunkóczi, Gábor Wallner, Björn Read, Randy J. Local Error Estimates Dramatically Improve the Utility of Homology Models for Solving Crystal Structures by Molecular Replacement |
title | Local Error Estimates Dramatically Improve the Utility of Homology Models for Solving Crystal Structures by Molecular Replacement |
title_full | Local Error Estimates Dramatically Improve the Utility of Homology Models for Solving Crystal Structures by Molecular Replacement |
title_fullStr | Local Error Estimates Dramatically Improve the Utility of Homology Models for Solving Crystal Structures by Molecular Replacement |
title_full_unstemmed | Local Error Estimates Dramatically Improve the Utility of Homology Models for Solving Crystal Structures by Molecular Replacement |
title_short | Local Error Estimates Dramatically Improve the Utility of Homology Models for Solving Crystal Structures by Molecular Replacement |
title_sort | local error estimates dramatically improve the utility of homology models for solving crystal structures by molecular replacement |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4321884/ https://www.ncbi.nlm.nih.gov/pubmed/25619999 http://dx.doi.org/10.1016/j.str.2014.11.020 |
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