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Complete genome sequence of Pseudomonas fluorescens strain PICF7, an indigenous root endophyte from olive (Olea europaea L.) and effective biocontrol agent against Verticillium dahliae
Pseudomonas fluorescens strain PICF7 is a native endophyte of olive roots. Previous studies have shown this motile, Gram-negative, non-sporulating bacterium is an effective biocontrol agent against the soil-borne fungus Verticillium dahliae, the causal agent of one of the most devastating diseases f...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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BioMed Central
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4322347/ https://www.ncbi.nlm.nih.gov/pubmed/25685259 http://dx.doi.org/10.1186/1944-3277-10-10 |
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author | Martínez-García, Pedro Manuel Ruano-Rosa, David Schilirò, Elisabetta Prieto, Pilar Ramos, Cayo Rodríguez-Palenzuela, Pablo Mercado-Blanco, Jesús |
author_facet | Martínez-García, Pedro Manuel Ruano-Rosa, David Schilirò, Elisabetta Prieto, Pilar Ramos, Cayo Rodríguez-Palenzuela, Pablo Mercado-Blanco, Jesús |
author_sort | Martínez-García, Pedro Manuel |
collection | PubMed |
description | Pseudomonas fluorescens strain PICF7 is a native endophyte of olive roots. Previous studies have shown this motile, Gram-negative, non-sporulating bacterium is an effective biocontrol agent against the soil-borne fungus Verticillium dahliae, the causal agent of one of the most devastating diseases for olive (Olea europaea L.) cultivation. Here, we announce and describe the complete genome sequence of Pseudomonas fluorescens strain PICF7 consisting of a circular chromosome of 6,136,735 bp that encodes 5,567 protein-coding genes and 88 RNA-only encoding genes. Genome analysis revealed genes predicting factors such as secretion systems, siderophores, detoxifying compounds or volatile components. Further analysis of the genome sequence of PICF7 will help in gaining insights into biocontrol and endophytism. |
format | Online Article Text |
id | pubmed-4322347 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-43223472015-02-13 Complete genome sequence of Pseudomonas fluorescens strain PICF7, an indigenous root endophyte from olive (Olea europaea L.) and effective biocontrol agent against Verticillium dahliae Martínez-García, Pedro Manuel Ruano-Rosa, David Schilirò, Elisabetta Prieto, Pilar Ramos, Cayo Rodríguez-Palenzuela, Pablo Mercado-Blanco, Jesús Stand Genomic Sci Short Genome Report Pseudomonas fluorescens strain PICF7 is a native endophyte of olive roots. Previous studies have shown this motile, Gram-negative, non-sporulating bacterium is an effective biocontrol agent against the soil-borne fungus Verticillium dahliae, the causal agent of one of the most devastating diseases for olive (Olea europaea L.) cultivation. Here, we announce and describe the complete genome sequence of Pseudomonas fluorescens strain PICF7 consisting of a circular chromosome of 6,136,735 bp that encodes 5,567 protein-coding genes and 88 RNA-only encoding genes. Genome analysis revealed genes predicting factors such as secretion systems, siderophores, detoxifying compounds or volatile components. Further analysis of the genome sequence of PICF7 will help in gaining insights into biocontrol and endophytism. BioMed Central 2015-02-06 /pmc/articles/PMC4322347/ /pubmed/25685259 http://dx.doi.org/10.1186/1944-3277-10-10 Text en Copyright © 2015 Martinez et al.; licensee BioMed Central. http://creativecommons.org/licenses/by/4.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Short Genome Report Martínez-García, Pedro Manuel Ruano-Rosa, David Schilirò, Elisabetta Prieto, Pilar Ramos, Cayo Rodríguez-Palenzuela, Pablo Mercado-Blanco, Jesús Complete genome sequence of Pseudomonas fluorescens strain PICF7, an indigenous root endophyte from olive (Olea europaea L.) and effective biocontrol agent against Verticillium dahliae |
title | Complete genome sequence of Pseudomonas fluorescens strain PICF7, an indigenous root endophyte from olive (Olea europaea L.) and effective biocontrol agent against Verticillium dahliae |
title_full | Complete genome sequence of Pseudomonas fluorescens strain PICF7, an indigenous root endophyte from olive (Olea europaea L.) and effective biocontrol agent against Verticillium dahliae |
title_fullStr | Complete genome sequence of Pseudomonas fluorescens strain PICF7, an indigenous root endophyte from olive (Olea europaea L.) and effective biocontrol agent against Verticillium dahliae |
title_full_unstemmed | Complete genome sequence of Pseudomonas fluorescens strain PICF7, an indigenous root endophyte from olive (Olea europaea L.) and effective biocontrol agent against Verticillium dahliae |
title_short | Complete genome sequence of Pseudomonas fluorescens strain PICF7, an indigenous root endophyte from olive (Olea europaea L.) and effective biocontrol agent against Verticillium dahliae |
title_sort | complete genome sequence of pseudomonas fluorescens strain picf7, an indigenous root endophyte from olive (olea europaea l.) and effective biocontrol agent against verticillium dahliae |
topic | Short Genome Report |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4322347/ https://www.ncbi.nlm.nih.gov/pubmed/25685259 http://dx.doi.org/10.1186/1944-3277-10-10 |
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