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Complete genome sequence of Pseudomonas fluorescens strain PICF7, an indigenous root endophyte from olive (Olea europaea L.) and effective biocontrol agent against Verticillium dahliae

Pseudomonas fluorescens strain PICF7 is a native endophyte of olive roots. Previous studies have shown this motile, Gram-negative, non-sporulating bacterium is an effective biocontrol agent against the soil-borne fungus Verticillium dahliae, the causal agent of one of the most devastating diseases f...

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Autores principales: Martínez-García, Pedro Manuel, Ruano-Rosa, David, Schilirò, Elisabetta, Prieto, Pilar, Ramos, Cayo, Rodríguez-Palenzuela, Pablo, Mercado-Blanco, Jesús
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4322347/
https://www.ncbi.nlm.nih.gov/pubmed/25685259
http://dx.doi.org/10.1186/1944-3277-10-10
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author Martínez-García, Pedro Manuel
Ruano-Rosa, David
Schilirò, Elisabetta
Prieto, Pilar
Ramos, Cayo
Rodríguez-Palenzuela, Pablo
Mercado-Blanco, Jesús
author_facet Martínez-García, Pedro Manuel
Ruano-Rosa, David
Schilirò, Elisabetta
Prieto, Pilar
Ramos, Cayo
Rodríguez-Palenzuela, Pablo
Mercado-Blanco, Jesús
author_sort Martínez-García, Pedro Manuel
collection PubMed
description Pseudomonas fluorescens strain PICF7 is a native endophyte of olive roots. Previous studies have shown this motile, Gram-negative, non-sporulating bacterium is an effective biocontrol agent against the soil-borne fungus Verticillium dahliae, the causal agent of one of the most devastating diseases for olive (Olea europaea L.) cultivation. Here, we announce and describe the complete genome sequence of Pseudomonas fluorescens strain PICF7 consisting of a circular chromosome of 6,136,735 bp that encodes 5,567 protein-coding genes and 88 RNA-only encoding genes. Genome analysis revealed genes predicting factors such as secretion systems, siderophores, detoxifying compounds or volatile components. Further analysis of the genome sequence of PICF7 will help in gaining insights into biocontrol and endophytism.
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spelling pubmed-43223472015-02-13 Complete genome sequence of Pseudomonas fluorescens strain PICF7, an indigenous root endophyte from olive (Olea europaea L.) and effective biocontrol agent against Verticillium dahliae Martínez-García, Pedro Manuel Ruano-Rosa, David Schilirò, Elisabetta Prieto, Pilar Ramos, Cayo Rodríguez-Palenzuela, Pablo Mercado-Blanco, Jesús Stand Genomic Sci Short Genome Report Pseudomonas fluorescens strain PICF7 is a native endophyte of olive roots. Previous studies have shown this motile, Gram-negative, non-sporulating bacterium is an effective biocontrol agent against the soil-borne fungus Verticillium dahliae, the causal agent of one of the most devastating diseases for olive (Olea europaea L.) cultivation. Here, we announce and describe the complete genome sequence of Pseudomonas fluorescens strain PICF7 consisting of a circular chromosome of 6,136,735 bp that encodes 5,567 protein-coding genes and 88 RNA-only encoding genes. Genome analysis revealed genes predicting factors such as secretion systems, siderophores, detoxifying compounds or volatile components. Further analysis of the genome sequence of PICF7 will help in gaining insights into biocontrol and endophytism. BioMed Central 2015-02-06 /pmc/articles/PMC4322347/ /pubmed/25685259 http://dx.doi.org/10.1186/1944-3277-10-10 Text en Copyright © 2015 Martinez et al.; licensee BioMed Central. http://creativecommons.org/licenses/by/4.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Short Genome Report
Martínez-García, Pedro Manuel
Ruano-Rosa, David
Schilirò, Elisabetta
Prieto, Pilar
Ramos, Cayo
Rodríguez-Palenzuela, Pablo
Mercado-Blanco, Jesús
Complete genome sequence of Pseudomonas fluorescens strain PICF7, an indigenous root endophyte from olive (Olea europaea L.) and effective biocontrol agent against Verticillium dahliae
title Complete genome sequence of Pseudomonas fluorescens strain PICF7, an indigenous root endophyte from olive (Olea europaea L.) and effective biocontrol agent against Verticillium dahliae
title_full Complete genome sequence of Pseudomonas fluorescens strain PICF7, an indigenous root endophyte from olive (Olea europaea L.) and effective biocontrol agent against Verticillium dahliae
title_fullStr Complete genome sequence of Pseudomonas fluorescens strain PICF7, an indigenous root endophyte from olive (Olea europaea L.) and effective biocontrol agent against Verticillium dahliae
title_full_unstemmed Complete genome sequence of Pseudomonas fluorescens strain PICF7, an indigenous root endophyte from olive (Olea europaea L.) and effective biocontrol agent against Verticillium dahliae
title_short Complete genome sequence of Pseudomonas fluorescens strain PICF7, an indigenous root endophyte from olive (Olea europaea L.) and effective biocontrol agent against Verticillium dahliae
title_sort complete genome sequence of pseudomonas fluorescens strain picf7, an indigenous root endophyte from olive (olea europaea l.) and effective biocontrol agent against verticillium dahliae
topic Short Genome Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4322347/
https://www.ncbi.nlm.nih.gov/pubmed/25685259
http://dx.doi.org/10.1186/1944-3277-10-10
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