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A draft genome for the African crocodilian trypanosome Trypanosoma grayi

The availability of genome sequence data has greatly enhanced our understanding of the adaptations of trypanosomatid parasites to their respective host environments. However, these studies remain somewhat restricted by modest taxon sampling, generally due to focus on the most important pathogens of...

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Autores principales: Kelly, Steven, Ivens, Alasdair, Manna, Paul T., Gibson, Wendy, Field, Mark C.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4322581/
https://www.ncbi.nlm.nih.gov/pubmed/25977781
http://dx.doi.org/10.1038/sdata.2014.24
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author Kelly, Steven
Ivens, Alasdair
Manna, Paul T.
Gibson, Wendy
Field, Mark C.
author_facet Kelly, Steven
Ivens, Alasdair
Manna, Paul T.
Gibson, Wendy
Field, Mark C.
author_sort Kelly, Steven
collection PubMed
description The availability of genome sequence data has greatly enhanced our understanding of the adaptations of trypanosomatid parasites to their respective host environments. However, these studies remain somewhat restricted by modest taxon sampling, generally due to focus on the most important pathogens of humans. To address this problem, at least in part, we are releasing a draft genome sequence for the African crocodilian trypanosome, Trypanosoma grayi ANR4. This dataset comprises genomic DNA sequences assembled de novo into contigs, encompassing over 10,000 annotated putative open reading frames and predicted protein products. Using phylogenomic approaches we demonstrate that T. grayi is more closely related to Trypanosoma cruzi than it is to the African trypanosomes T. brucei, T. congolense and T. vivax, despite the fact T. grayi and the African trypanosomes are each transmitted by tsetse flies. The data are deposited in publicly accessible repositories where we hope they will prove useful to the community in evolutionary studies of the trypanosomatids.
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spelling pubmed-43225812015-05-14 A draft genome for the African crocodilian trypanosome Trypanosoma grayi Kelly, Steven Ivens, Alasdair Manna, Paul T. Gibson, Wendy Field, Mark C. Sci Data Data Descriptor The availability of genome sequence data has greatly enhanced our understanding of the adaptations of trypanosomatid parasites to their respective host environments. However, these studies remain somewhat restricted by modest taxon sampling, generally due to focus on the most important pathogens of humans. To address this problem, at least in part, we are releasing a draft genome sequence for the African crocodilian trypanosome, Trypanosoma grayi ANR4. This dataset comprises genomic DNA sequences assembled de novo into contigs, encompassing over 10,000 annotated putative open reading frames and predicted protein products. Using phylogenomic approaches we demonstrate that T. grayi is more closely related to Trypanosoma cruzi than it is to the African trypanosomes T. brucei, T. congolense and T. vivax, despite the fact T. grayi and the African trypanosomes are each transmitted by tsetse flies. The data are deposited in publicly accessible repositories where we hope they will prove useful to the community in evolutionary studies of the trypanosomatids. Nature Publishing Group 2014-08-05 /pmc/articles/PMC4322581/ /pubmed/25977781 http://dx.doi.org/10.1038/sdata.2014.24 Text en Copyright © 2014, Macmillan Publishers Limited http://creativecommons.org/licenses/by/4.0 This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0 Metadata associated with this Data Descriptor is available at http://www.nature.com/sdata/ and is released under the CC0 waiver to maximize reuse.
spellingShingle Data Descriptor
Kelly, Steven
Ivens, Alasdair
Manna, Paul T.
Gibson, Wendy
Field, Mark C.
A draft genome for the African crocodilian trypanosome Trypanosoma grayi
title A draft genome for the African crocodilian trypanosome Trypanosoma grayi
title_full A draft genome for the African crocodilian trypanosome Trypanosoma grayi
title_fullStr A draft genome for the African crocodilian trypanosome Trypanosoma grayi
title_full_unstemmed A draft genome for the African crocodilian trypanosome Trypanosoma grayi
title_short A draft genome for the African crocodilian trypanosome Trypanosoma grayi
title_sort draft genome for the african crocodilian trypanosome trypanosoma grayi
topic Data Descriptor
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4322581/
https://www.ncbi.nlm.nih.gov/pubmed/25977781
http://dx.doi.org/10.1038/sdata.2014.24
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