Cargando…
A draft genome for the African crocodilian trypanosome Trypanosoma grayi
The availability of genome sequence data has greatly enhanced our understanding of the adaptations of trypanosomatid parasites to their respective host environments. However, these studies remain somewhat restricted by modest taxon sampling, generally due to focus on the most important pathogens of...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2014
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4322581/ https://www.ncbi.nlm.nih.gov/pubmed/25977781 http://dx.doi.org/10.1038/sdata.2014.24 |
_version_ | 1782356412618244096 |
---|---|
author | Kelly, Steven Ivens, Alasdair Manna, Paul T. Gibson, Wendy Field, Mark C. |
author_facet | Kelly, Steven Ivens, Alasdair Manna, Paul T. Gibson, Wendy Field, Mark C. |
author_sort | Kelly, Steven |
collection | PubMed |
description | The availability of genome sequence data has greatly enhanced our understanding of the adaptations of trypanosomatid parasites to their respective host environments. However, these studies remain somewhat restricted by modest taxon sampling, generally due to focus on the most important pathogens of humans. To address this problem, at least in part, we are releasing a draft genome sequence for the African crocodilian trypanosome, Trypanosoma grayi ANR4. This dataset comprises genomic DNA sequences assembled de novo into contigs, encompassing over 10,000 annotated putative open reading frames and predicted protein products. Using phylogenomic approaches we demonstrate that T. grayi is more closely related to Trypanosoma cruzi than it is to the African trypanosomes T. brucei, T. congolense and T. vivax, despite the fact T. grayi and the African trypanosomes are each transmitted by tsetse flies. The data are deposited in publicly accessible repositories where we hope they will prove useful to the community in evolutionary studies of the trypanosomatids. |
format | Online Article Text |
id | pubmed-4322581 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-43225812015-05-14 A draft genome for the African crocodilian trypanosome Trypanosoma grayi Kelly, Steven Ivens, Alasdair Manna, Paul T. Gibson, Wendy Field, Mark C. Sci Data Data Descriptor The availability of genome sequence data has greatly enhanced our understanding of the adaptations of trypanosomatid parasites to their respective host environments. However, these studies remain somewhat restricted by modest taxon sampling, generally due to focus on the most important pathogens of humans. To address this problem, at least in part, we are releasing a draft genome sequence for the African crocodilian trypanosome, Trypanosoma grayi ANR4. This dataset comprises genomic DNA sequences assembled de novo into contigs, encompassing over 10,000 annotated putative open reading frames and predicted protein products. Using phylogenomic approaches we demonstrate that T. grayi is more closely related to Trypanosoma cruzi than it is to the African trypanosomes T. brucei, T. congolense and T. vivax, despite the fact T. grayi and the African trypanosomes are each transmitted by tsetse flies. The data are deposited in publicly accessible repositories where we hope they will prove useful to the community in evolutionary studies of the trypanosomatids. Nature Publishing Group 2014-08-05 /pmc/articles/PMC4322581/ /pubmed/25977781 http://dx.doi.org/10.1038/sdata.2014.24 Text en Copyright © 2014, Macmillan Publishers Limited http://creativecommons.org/licenses/by/4.0 This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0 Metadata associated with this Data Descriptor is available at http://www.nature.com/sdata/ and is released under the CC0 waiver to maximize reuse. |
spellingShingle | Data Descriptor Kelly, Steven Ivens, Alasdair Manna, Paul T. Gibson, Wendy Field, Mark C. A draft genome for the African crocodilian trypanosome Trypanosoma grayi |
title | A draft genome for the African crocodilian trypanosome Trypanosoma grayi
|
title_full | A draft genome for the African crocodilian trypanosome Trypanosoma grayi
|
title_fullStr | A draft genome for the African crocodilian trypanosome Trypanosoma grayi
|
title_full_unstemmed | A draft genome for the African crocodilian trypanosome Trypanosoma grayi
|
title_short | A draft genome for the African crocodilian trypanosome Trypanosoma grayi
|
title_sort | draft genome for the african crocodilian trypanosome trypanosoma grayi |
topic | Data Descriptor |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4322581/ https://www.ncbi.nlm.nih.gov/pubmed/25977781 http://dx.doi.org/10.1038/sdata.2014.24 |
work_keys_str_mv | AT kellysteven adraftgenomefortheafricancrocodiliantrypanosometrypanosomagrayi AT ivensalasdair adraftgenomefortheafricancrocodiliantrypanosometrypanosomagrayi AT mannapault adraftgenomefortheafricancrocodiliantrypanosometrypanosomagrayi AT gibsonwendy adraftgenomefortheafricancrocodiliantrypanosometrypanosomagrayi AT fieldmarkc adraftgenomefortheafricancrocodiliantrypanosometrypanosomagrayi AT kellysteven draftgenomefortheafricancrocodiliantrypanosometrypanosomagrayi AT ivensalasdair draftgenomefortheafricancrocodiliantrypanosometrypanosomagrayi AT mannapault draftgenomefortheafricancrocodiliantrypanosometrypanosomagrayi AT gibsonwendy draftgenomefortheafricancrocodiliantrypanosometrypanosomagrayi AT fieldmarkc draftgenomefortheafricancrocodiliantrypanosometrypanosomagrayi |