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Analysis of Discrimination Techniques for Low-Cost Narrow-Band Spectrofluorometers

The need for covering large areas in oceanographic measurement campaigns and the general interest in reducing the observational costs open the necessity to develop new strategies towards this objective, fundamental to deal with current and future research projects. In this respect, the development o...

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Autores principales: Aymerich, Ismael F., Sánchez, Albert-Miquel, Pérez, Sergio, Piera, Jaume
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4327038/
https://www.ncbi.nlm.nih.gov/pubmed/25558997
http://dx.doi.org/10.3390/s150100611
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author Aymerich, Ismael F.
Sánchez, Albert-Miquel
Pérez, Sergio
Piera, Jaume
author_facet Aymerich, Ismael F.
Sánchez, Albert-Miquel
Pérez, Sergio
Piera, Jaume
author_sort Aymerich, Ismael F.
collection PubMed
description The need for covering large areas in oceanographic measurement campaigns and the general interest in reducing the observational costs open the necessity to develop new strategies towards this objective, fundamental to deal with current and future research projects. In this respect, the development of low-cost instruments becomes a key factor, but optimal signal-processing techniques must be used to balance their measurements with those obtained from accurate but expensive instruments. In this paper, a complete signal-processing chain to process the fluorescence spectra of marine organisms for taxonomic discrimination is proposed. It has been designed to deal with noisy, narrow-band and low-resolution data obtained from low-cost sensors or instruments and to optimize its computational cost, and it consists of four separated blocks that denoise, normalize, transform and classify the samples. For each block, several techniques are tested and compared to find the best combination that optimizes the classification of the samples. The signal processing has been focused on the Chlorophyll-a fluorescence peak, since it presents the highest emission levels and it can be measured with sensors presenting poor sensitivity and signal-to-noise ratios. The whole methodology has been successfully validated by means of the fluorescence spectra emitted by five different cultures.
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spelling pubmed-43270382015-02-23 Analysis of Discrimination Techniques for Low-Cost Narrow-Band Spectrofluorometers Aymerich, Ismael F. Sánchez, Albert-Miquel Pérez, Sergio Piera, Jaume Sensors (Basel) Article The need for covering large areas in oceanographic measurement campaigns and the general interest in reducing the observational costs open the necessity to develop new strategies towards this objective, fundamental to deal with current and future research projects. In this respect, the development of low-cost instruments becomes a key factor, but optimal signal-processing techniques must be used to balance their measurements with those obtained from accurate but expensive instruments. In this paper, a complete signal-processing chain to process the fluorescence spectra of marine organisms for taxonomic discrimination is proposed. It has been designed to deal with noisy, narrow-band and low-resolution data obtained from low-cost sensors or instruments and to optimize its computational cost, and it consists of four separated blocks that denoise, normalize, transform and classify the samples. For each block, several techniques are tested and compared to find the best combination that optimizes the classification of the samples. The signal processing has been focused on the Chlorophyll-a fluorescence peak, since it presents the highest emission levels and it can be measured with sensors presenting poor sensitivity and signal-to-noise ratios. The whole methodology has been successfully validated by means of the fluorescence spectra emitted by five different cultures. MDPI 2014-12-30 /pmc/articles/PMC4327038/ /pubmed/25558997 http://dx.doi.org/10.3390/s150100611 Text en © 2015 by the authors; licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Aymerich, Ismael F.
Sánchez, Albert-Miquel
Pérez, Sergio
Piera, Jaume
Analysis of Discrimination Techniques for Low-Cost Narrow-Band Spectrofluorometers
title Analysis of Discrimination Techniques for Low-Cost Narrow-Band Spectrofluorometers
title_full Analysis of Discrimination Techniques for Low-Cost Narrow-Band Spectrofluorometers
title_fullStr Analysis of Discrimination Techniques for Low-Cost Narrow-Band Spectrofluorometers
title_full_unstemmed Analysis of Discrimination Techniques for Low-Cost Narrow-Band Spectrofluorometers
title_short Analysis of Discrimination Techniques for Low-Cost Narrow-Band Spectrofluorometers
title_sort analysis of discrimination techniques for low-cost narrow-band spectrofluorometers
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4327038/
https://www.ncbi.nlm.nih.gov/pubmed/25558997
http://dx.doi.org/10.3390/s150100611
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