Cargando…
Development and characterization of microsatellite loci for the pseudometallophyte Commelina communis (Commelinaceae)(1)
• Premise of the study: Microsatellite primers were developed for the pseudometallophyte Commelina communis (Commelinaceae), an important pioneer plant for phytoremediation of copper-contaminated soil. Two wild populations collected from metalliferous and nonmetalliferous sites were used to assess t...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Botanical Society of America
2015
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4332143/ https://www.ncbi.nlm.nih.gov/pubmed/25699218 http://dx.doi.org/10.3732/apps.1400098 |
_version_ | 1782357853739155456 |
---|---|
author | Li, Jiao-Kun Song, Yun-Peng Xu, Hui Zhu, Jian-Yu Tang, Lu-Lu |
author_facet | Li, Jiao-Kun Song, Yun-Peng Xu, Hui Zhu, Jian-Yu Tang, Lu-Lu |
author_sort | Li, Jiao-Kun |
collection | PubMed |
description | • Premise of the study: Microsatellite primers were developed for the pseudometallophyte Commelina communis (Commelinaceae), an important pioneer plant for phytoremediation of copper-contaminated soil. Two wild populations collected from metalliferous and nonmetalliferous sites were used to assess the polymorphism at each locus. • Methods and Results: Based on the Fast Isolation by AFLP of Sequences COntaining repeats (FIASCO) method, a total of 34 pairs of simple sequence repeat (SSR) markers were designed. When 40 specimens from two populations were screened, 12 microsatellite loci were found to be highly polymorphic. The number of alleles per locus ranged from one to 11 and the observed and expected heterozygosity per locus ranged from 0.000 to 1.000 and from 0.195 to 0.941, respectively. • Conclusions: These markers will be useful for examining genetic diversity, population structure, and gene flow in populations of C. communis under different edaphic conditions and guiding sustainable management plans for phytoremediation. |
format | Online Article Text |
id | pubmed-4332143 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Botanical Society of America |
record_format | MEDLINE/PubMed |
spelling | pubmed-43321432015-02-19 Development and characterization of microsatellite loci for the pseudometallophyte Commelina communis (Commelinaceae)(1) Li, Jiao-Kun Song, Yun-Peng Xu, Hui Zhu, Jian-Yu Tang, Lu-Lu Appl Plant Sci Primer Note • Premise of the study: Microsatellite primers were developed for the pseudometallophyte Commelina communis (Commelinaceae), an important pioneer plant for phytoremediation of copper-contaminated soil. Two wild populations collected from metalliferous and nonmetalliferous sites were used to assess the polymorphism at each locus. • Methods and Results: Based on the Fast Isolation by AFLP of Sequences COntaining repeats (FIASCO) method, a total of 34 pairs of simple sequence repeat (SSR) markers were designed. When 40 specimens from two populations were screened, 12 microsatellite loci were found to be highly polymorphic. The number of alleles per locus ranged from one to 11 and the observed and expected heterozygosity per locus ranged from 0.000 to 1.000 and from 0.195 to 0.941, respectively. • Conclusions: These markers will be useful for examining genetic diversity, population structure, and gene flow in populations of C. communis under different edaphic conditions and guiding sustainable management plans for phytoremediation. Botanical Society of America 2015-01-30 /pmc/articles/PMC4332143/ /pubmed/25699218 http://dx.doi.org/10.3732/apps.1400098 Text en © 2015 Li et al. Published by the Botanical Society of America http://creativecommons.org/licenses/by-nc/4.0/ This work is licensed under a Creative Commons Attribution License (CC-BY-NC-SA). |
spellingShingle | Primer Note Li, Jiao-Kun Song, Yun-Peng Xu, Hui Zhu, Jian-Yu Tang, Lu-Lu Development and characterization of microsatellite loci for the pseudometallophyte Commelina communis (Commelinaceae)(1) |
title | Development and characterization of microsatellite loci for the pseudometallophyte Commelina communis (Commelinaceae)(1) |
title_full | Development and characterization of microsatellite loci for the pseudometallophyte Commelina communis (Commelinaceae)(1) |
title_fullStr | Development and characterization of microsatellite loci for the pseudometallophyte Commelina communis (Commelinaceae)(1) |
title_full_unstemmed | Development and characterization of microsatellite loci for the pseudometallophyte Commelina communis (Commelinaceae)(1) |
title_short | Development and characterization of microsatellite loci for the pseudometallophyte Commelina communis (Commelinaceae)(1) |
title_sort | development and characterization of microsatellite loci for the pseudometallophyte commelina communis (commelinaceae)(1) |
topic | Primer Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4332143/ https://www.ncbi.nlm.nih.gov/pubmed/25699218 http://dx.doi.org/10.3732/apps.1400098 |
work_keys_str_mv | AT lijiaokun developmentandcharacterizationofmicrosatellitelociforthepseudometallophytecommelinacommuniscommelinaceae1 AT songyunpeng developmentandcharacterizationofmicrosatellitelociforthepseudometallophytecommelinacommuniscommelinaceae1 AT xuhui developmentandcharacterizationofmicrosatellitelociforthepseudometallophytecommelinacommuniscommelinaceae1 AT zhujianyu developmentandcharacterizationofmicrosatellitelociforthepseudometallophytecommelinacommuniscommelinaceae1 AT tanglulu developmentandcharacterizationofmicrosatellitelociforthepseudometallophytecommelinacommuniscommelinaceae1 |