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Development and characterization of microsatellite loci for the pseudometallophyte Commelina communis (Commelinaceae)(1)

• Premise of the study: Microsatellite primers were developed for the pseudometallophyte Commelina communis (Commelinaceae), an important pioneer plant for phytoremediation of copper-contaminated soil. Two wild populations collected from metalliferous and nonmetalliferous sites were used to assess t...

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Autores principales: Li, Jiao-Kun, Song, Yun-Peng, Xu, Hui, Zhu, Jian-Yu, Tang, Lu-Lu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Botanical Society of America 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4332143/
https://www.ncbi.nlm.nih.gov/pubmed/25699218
http://dx.doi.org/10.3732/apps.1400098
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author Li, Jiao-Kun
Song, Yun-Peng
Xu, Hui
Zhu, Jian-Yu
Tang, Lu-Lu
author_facet Li, Jiao-Kun
Song, Yun-Peng
Xu, Hui
Zhu, Jian-Yu
Tang, Lu-Lu
author_sort Li, Jiao-Kun
collection PubMed
description • Premise of the study: Microsatellite primers were developed for the pseudometallophyte Commelina communis (Commelinaceae), an important pioneer plant for phytoremediation of copper-contaminated soil. Two wild populations collected from metalliferous and nonmetalliferous sites were used to assess the polymorphism at each locus. • Methods and Results: Based on the Fast Isolation by AFLP of Sequences COntaining repeats (FIASCO) method, a total of 34 pairs of simple sequence repeat (SSR) markers were designed. When 40 specimens from two populations were screened, 12 microsatellite loci were found to be highly polymorphic. The number of alleles per locus ranged from one to 11 and the observed and expected heterozygosity per locus ranged from 0.000 to 1.000 and from 0.195 to 0.941, respectively. • Conclusions: These markers will be useful for examining genetic diversity, population structure, and gene flow in populations of C. communis under different edaphic conditions and guiding sustainable management plans for phytoremediation.
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spelling pubmed-43321432015-02-19 Development and characterization of microsatellite loci for the pseudometallophyte Commelina communis (Commelinaceae)(1) Li, Jiao-Kun Song, Yun-Peng Xu, Hui Zhu, Jian-Yu Tang, Lu-Lu Appl Plant Sci Primer Note • Premise of the study: Microsatellite primers were developed for the pseudometallophyte Commelina communis (Commelinaceae), an important pioneer plant for phytoremediation of copper-contaminated soil. Two wild populations collected from metalliferous and nonmetalliferous sites were used to assess the polymorphism at each locus. • Methods and Results: Based on the Fast Isolation by AFLP of Sequences COntaining repeats (FIASCO) method, a total of 34 pairs of simple sequence repeat (SSR) markers were designed. When 40 specimens from two populations were screened, 12 microsatellite loci were found to be highly polymorphic. The number of alleles per locus ranged from one to 11 and the observed and expected heterozygosity per locus ranged from 0.000 to 1.000 and from 0.195 to 0.941, respectively. • Conclusions: These markers will be useful for examining genetic diversity, population structure, and gene flow in populations of C. communis under different edaphic conditions and guiding sustainable management plans for phytoremediation. Botanical Society of America 2015-01-30 /pmc/articles/PMC4332143/ /pubmed/25699218 http://dx.doi.org/10.3732/apps.1400098 Text en © 2015 Li et al. Published by the Botanical Society of America http://creativecommons.org/licenses/by-nc/4.0/ This work is licensed under a Creative Commons Attribution License (CC-BY-NC-SA).
spellingShingle Primer Note
Li, Jiao-Kun
Song, Yun-Peng
Xu, Hui
Zhu, Jian-Yu
Tang, Lu-Lu
Development and characterization of microsatellite loci for the pseudometallophyte Commelina communis (Commelinaceae)(1)
title Development and characterization of microsatellite loci for the pseudometallophyte Commelina communis (Commelinaceae)(1)
title_full Development and characterization of microsatellite loci for the pseudometallophyte Commelina communis (Commelinaceae)(1)
title_fullStr Development and characterization of microsatellite loci for the pseudometallophyte Commelina communis (Commelinaceae)(1)
title_full_unstemmed Development and characterization of microsatellite loci for the pseudometallophyte Commelina communis (Commelinaceae)(1)
title_short Development and characterization of microsatellite loci for the pseudometallophyte Commelina communis (Commelinaceae)(1)
title_sort development and characterization of microsatellite loci for the pseudometallophyte commelina communis (commelinaceae)(1)
topic Primer Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4332143/
https://www.ncbi.nlm.nih.gov/pubmed/25699218
http://dx.doi.org/10.3732/apps.1400098
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