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Transcriptome sequencing and marker development for four underutilized legumes(1)

• Premise of the study: Combating threats to food and nutrition security in the context of climate change and global population increase is one of the highest priorities of major international organizations. Hundreds of species are grown on a small scale in some of the most drought/flood-prone regio...

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Autor principal: Chapman, Mark A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Botanical Society of America 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4332146/
https://www.ncbi.nlm.nih.gov/pubmed/25699221
http://dx.doi.org/10.3732/apps.1400111
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author Chapman, Mark A.
author_facet Chapman, Mark A.
author_sort Chapman, Mark A.
collection PubMed
description • Premise of the study: Combating threats to food and nutrition security in the context of climate change and global population increase is one of the highest priorities of major international organizations. Hundreds of species are grown on a small scale in some of the most drought/flood-prone regions of the world and as such may harbor some of the most environmentally tolerant crops (and alleles). • Methods and Results: In this study, transcriptomes were sequenced, assembled, and annotated for four underutilized legume crops. Microsatellite markers were identified in each species, as well as a conserved orthologous set of markers for cross-family phylogenetics and comparative mapping, which were ground-truthed on a panel of diverse legume germplasm. • Conclusions: An understanding of these underutilized legumes will inform crop selection and breeding by allowing the investigation of genetic variation and the genetic basis of adaptive traits to be established.
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spelling pubmed-43321462015-02-19 Transcriptome sequencing and marker development for four underutilized legumes(1) Chapman, Mark A. Appl Plant Sci Genomic Resources Note • Premise of the study: Combating threats to food and nutrition security in the context of climate change and global population increase is one of the highest priorities of major international organizations. Hundreds of species are grown on a small scale in some of the most drought/flood-prone regions of the world and as such may harbor some of the most environmentally tolerant crops (and alleles). • Methods and Results: In this study, transcriptomes were sequenced, assembled, and annotated for four underutilized legume crops. Microsatellite markers were identified in each species, as well as a conserved orthologous set of markers for cross-family phylogenetics and comparative mapping, which were ground-truthed on a panel of diverse legume germplasm. • Conclusions: An understanding of these underutilized legumes will inform crop selection and breeding by allowing the investigation of genetic variation and the genetic basis of adaptive traits to be established. Botanical Society of America 2015-02-10 /pmc/articles/PMC4332146/ /pubmed/25699221 http://dx.doi.org/10.3732/apps.1400111 Text en © 2015 Chapman. Published by the Botanical Society of America http://creativecommons.org/licenses/by-nc/4.0/ This work is licensed under a Creative Commons Attribution License (CC-BY-NC-SA).
spellingShingle Genomic Resources Note
Chapman, Mark A.
Transcriptome sequencing and marker development for four underutilized legumes(1)
title Transcriptome sequencing and marker development for four underutilized legumes(1)
title_full Transcriptome sequencing and marker development for four underutilized legumes(1)
title_fullStr Transcriptome sequencing and marker development for four underutilized legumes(1)
title_full_unstemmed Transcriptome sequencing and marker development for four underutilized legumes(1)
title_short Transcriptome sequencing and marker development for four underutilized legumes(1)
title_sort transcriptome sequencing and marker development for four underutilized legumes(1)
topic Genomic Resources Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4332146/
https://www.ncbi.nlm.nih.gov/pubmed/25699221
http://dx.doi.org/10.3732/apps.1400111
work_keys_str_mv AT chapmanmarka transcriptomesequencingandmarkerdevelopmentforfourunderutilizedlegumes1