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Use of RxNorm and NDF-RT to normalize and characterize participant-reported medications in an i2b2-based research repository

The MURDOCK Study is longitudinal, large-scale epidemiological study for which participants’ medication use is collected as free text. In order to maximize utility of drug data, while minimizing cost due to manual expert intervention, we have developed a generalizable approach to automatically codin...

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Detalles Bibliográficos
Autores principales: Blach, Colette, Del Fiol, Guilherme, Dundee, Chandel, Frund, Julie, Richesson, Rachel, Smerek, Michelle, Walden, Anita, Tenenbaum, Jessica D.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Medical Informatics Association 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4333688/
https://www.ncbi.nlm.nih.gov/pubmed/25717397
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author Blach, Colette
Del Fiol, Guilherme
Dundee, Chandel
Frund, Julie
Richesson, Rachel
Smerek, Michelle
Walden, Anita
Tenenbaum, Jessica D.
author_facet Blach, Colette
Del Fiol, Guilherme
Dundee, Chandel
Frund, Julie
Richesson, Rachel
Smerek, Michelle
Walden, Anita
Tenenbaum, Jessica D.
author_sort Blach, Colette
collection PubMed
description The MURDOCK Study is longitudinal, large-scale epidemiological study for which participants’ medication use is collected as free text. In order to maximize utility of drug data, while minimizing cost due to manual expert intervention, we have developed a generalizable approach to automatically coding medication data using RxNorm and NDF-RT and their associated application program interfaces (APIs). Of 130,273 entries, we were able to accurately map 122,523 (94%) to RxNorm concepts, and 106,135 (85%) of those drug concepts to nodes under the Drug by VA Class branch of NDF-RT. This approach has enabled use of drug data in combination with other complementary information for cohort identification within an i2b2-based participant registry. The method may be generalized to other projects requiring coding of medication data from free-text.
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spelling pubmed-43336882015-02-25 Use of RxNorm and NDF-RT to normalize and characterize participant-reported medications in an i2b2-based research repository Blach, Colette Del Fiol, Guilherme Dundee, Chandel Frund, Julie Richesson, Rachel Smerek, Michelle Walden, Anita Tenenbaum, Jessica D. AMIA Jt Summits Transl Sci Proc Articles The MURDOCK Study is longitudinal, large-scale epidemiological study for which participants’ medication use is collected as free text. In order to maximize utility of drug data, while minimizing cost due to manual expert intervention, we have developed a generalizable approach to automatically coding medication data using RxNorm and NDF-RT and their associated application program interfaces (APIs). Of 130,273 entries, we were able to accurately map 122,523 (94%) to RxNorm concepts, and 106,135 (85%) of those drug concepts to nodes under the Drug by VA Class branch of NDF-RT. This approach has enabled use of drug data in combination with other complementary information for cohort identification within an i2b2-based participant registry. The method may be generalized to other projects requiring coding of medication data from free-text. American Medical Informatics Association 2014-04-07 /pmc/articles/PMC4333688/ /pubmed/25717397 Text en ©2014 AMIA - All rights reserved. This is an Open Access article: verbatim copying and redistribution of this article are permitted in all media for any purpose
spellingShingle Articles
Blach, Colette
Del Fiol, Guilherme
Dundee, Chandel
Frund, Julie
Richesson, Rachel
Smerek, Michelle
Walden, Anita
Tenenbaum, Jessica D.
Use of RxNorm and NDF-RT to normalize and characterize participant-reported medications in an i2b2-based research repository
title Use of RxNorm and NDF-RT to normalize and characterize participant-reported medications in an i2b2-based research repository
title_full Use of RxNorm and NDF-RT to normalize and characterize participant-reported medications in an i2b2-based research repository
title_fullStr Use of RxNorm and NDF-RT to normalize and characterize participant-reported medications in an i2b2-based research repository
title_full_unstemmed Use of RxNorm and NDF-RT to normalize and characterize participant-reported medications in an i2b2-based research repository
title_short Use of RxNorm and NDF-RT to normalize and characterize participant-reported medications in an i2b2-based research repository
title_sort use of rxnorm and ndf-rt to normalize and characterize participant-reported medications in an i2b2-based research repository
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4333688/
https://www.ncbi.nlm.nih.gov/pubmed/25717397
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