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Use of RxNorm and NDF-RT to normalize and characterize participant-reported medications in an i2b2-based research repository
The MURDOCK Study is longitudinal, large-scale epidemiological study for which participants’ medication use is collected as free text. In order to maximize utility of drug data, while minimizing cost due to manual expert intervention, we have developed a generalizable approach to automatically codin...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Medical Informatics Association
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4333688/ https://www.ncbi.nlm.nih.gov/pubmed/25717397 |
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author | Blach, Colette Del Fiol, Guilherme Dundee, Chandel Frund, Julie Richesson, Rachel Smerek, Michelle Walden, Anita Tenenbaum, Jessica D. |
author_facet | Blach, Colette Del Fiol, Guilherme Dundee, Chandel Frund, Julie Richesson, Rachel Smerek, Michelle Walden, Anita Tenenbaum, Jessica D. |
author_sort | Blach, Colette |
collection | PubMed |
description | The MURDOCK Study is longitudinal, large-scale epidemiological study for which participants’ medication use is collected as free text. In order to maximize utility of drug data, while minimizing cost due to manual expert intervention, we have developed a generalizable approach to automatically coding medication data using RxNorm and NDF-RT and their associated application program interfaces (APIs). Of 130,273 entries, we were able to accurately map 122,523 (94%) to RxNorm concepts, and 106,135 (85%) of those drug concepts to nodes under the Drug by VA Class branch of NDF-RT. This approach has enabled use of drug data in combination with other complementary information for cohort identification within an i2b2-based participant registry. The method may be generalized to other projects requiring coding of medication data from free-text. |
format | Online Article Text |
id | pubmed-4333688 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | American Medical Informatics Association |
record_format | MEDLINE/PubMed |
spelling | pubmed-43336882015-02-25 Use of RxNorm and NDF-RT to normalize and characterize participant-reported medications in an i2b2-based research repository Blach, Colette Del Fiol, Guilherme Dundee, Chandel Frund, Julie Richesson, Rachel Smerek, Michelle Walden, Anita Tenenbaum, Jessica D. AMIA Jt Summits Transl Sci Proc Articles The MURDOCK Study is longitudinal, large-scale epidemiological study for which participants’ medication use is collected as free text. In order to maximize utility of drug data, while minimizing cost due to manual expert intervention, we have developed a generalizable approach to automatically coding medication data using RxNorm and NDF-RT and their associated application program interfaces (APIs). Of 130,273 entries, we were able to accurately map 122,523 (94%) to RxNorm concepts, and 106,135 (85%) of those drug concepts to nodes under the Drug by VA Class branch of NDF-RT. This approach has enabled use of drug data in combination with other complementary information for cohort identification within an i2b2-based participant registry. The method may be generalized to other projects requiring coding of medication data from free-text. American Medical Informatics Association 2014-04-07 /pmc/articles/PMC4333688/ /pubmed/25717397 Text en ©2014 AMIA - All rights reserved. This is an Open Access article: verbatim copying and redistribution of this article are permitted in all media for any purpose |
spellingShingle | Articles Blach, Colette Del Fiol, Guilherme Dundee, Chandel Frund, Julie Richesson, Rachel Smerek, Michelle Walden, Anita Tenenbaum, Jessica D. Use of RxNorm and NDF-RT to normalize and characterize participant-reported medications in an i2b2-based research repository |
title | Use of RxNorm and NDF-RT to normalize and characterize participant-reported medications in an i2b2-based research repository |
title_full | Use of RxNorm and NDF-RT to normalize and characterize participant-reported medications in an i2b2-based research repository |
title_fullStr | Use of RxNorm and NDF-RT to normalize and characterize participant-reported medications in an i2b2-based research repository |
title_full_unstemmed | Use of RxNorm and NDF-RT to normalize and characterize participant-reported medications in an i2b2-based research repository |
title_short | Use of RxNorm and NDF-RT to normalize and characterize participant-reported medications in an i2b2-based research repository |
title_sort | use of rxnorm and ndf-rt to normalize and characterize participant-reported medications in an i2b2-based research repository |
topic | Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4333688/ https://www.ncbi.nlm.nih.gov/pubmed/25717397 |
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