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Efficiently mining Adverse Event Reporting System for multiple drug interactions
Efficiently mining multiple drug interactions and reactions from Adverse Event Reporting System (AERS) is a challenging problem which has not been sufficiently addressed by existing methods. To tackle this challenge, we propose a FCI-fliter approach which leverages the efforts of UMLS mapping, frequ...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Medical Informatics Association
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4333704/ https://www.ncbi.nlm.nih.gov/pubmed/25717411 |
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author | Xiang, Yang Albin, Aaron Ren, Kaiyu Zhang, Pengyue Etter, Jonathan P. Lin, Simon Li, Lang |
author_facet | Xiang, Yang Albin, Aaron Ren, Kaiyu Zhang, Pengyue Etter, Jonathan P. Lin, Simon Li, Lang |
author_sort | Xiang, Yang |
collection | PubMed |
description | Efficiently mining multiple drug interactions and reactions from Adverse Event Reporting System (AERS) is a challenging problem which has not been sufficiently addressed by existing methods. To tackle this challenge, we propose a FCI-fliter approach which leverages the efforts of UMLS mapping, frequent closed itemset mining, and uninformative association identification and removal. By applying our method on AERS, we identified a large number of multiple drug interactions with reactions. By statistical analysis, we found most of the identified associations have very small p-values which suggest that they are statistically significant. Further analysis on the results shows that many multiple drug interactions and reactions are clinically interesting, and suggests that our method may be further improved with the combination of external knowledge. |
format | Online Article Text |
id | pubmed-4333704 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | American Medical Informatics Association |
record_format | MEDLINE/PubMed |
spelling | pubmed-43337042015-02-25 Efficiently mining Adverse Event Reporting System for multiple drug interactions Xiang, Yang Albin, Aaron Ren, Kaiyu Zhang, Pengyue Etter, Jonathan P. Lin, Simon Li, Lang AMIA Jt Summits Transl Sci Proc Articles Efficiently mining multiple drug interactions and reactions from Adverse Event Reporting System (AERS) is a challenging problem which has not been sufficiently addressed by existing methods. To tackle this challenge, we propose a FCI-fliter approach which leverages the efforts of UMLS mapping, frequent closed itemset mining, and uninformative association identification and removal. By applying our method on AERS, we identified a large number of multiple drug interactions with reactions. By statistical analysis, we found most of the identified associations have very small p-values which suggest that they are statistically significant. Further analysis on the results shows that many multiple drug interactions and reactions are clinically interesting, and suggests that our method may be further improved with the combination of external knowledge. American Medical Informatics Association 2014-04-07 /pmc/articles/PMC4333704/ /pubmed/25717411 Text en ©2014 AMIA - All rights reserved. This is an Open Access article: verbatim copying and redistribution of this article are permitted in all media for any purpose |
spellingShingle | Articles Xiang, Yang Albin, Aaron Ren, Kaiyu Zhang, Pengyue Etter, Jonathan P. Lin, Simon Li, Lang Efficiently mining Adverse Event Reporting System for multiple drug interactions |
title | Efficiently mining Adverse Event Reporting System for multiple drug interactions |
title_full | Efficiently mining Adverse Event Reporting System for multiple drug interactions |
title_fullStr | Efficiently mining Adverse Event Reporting System for multiple drug interactions |
title_full_unstemmed | Efficiently mining Adverse Event Reporting System for multiple drug interactions |
title_short | Efficiently mining Adverse Event Reporting System for multiple drug interactions |
title_sort | efficiently mining adverse event reporting system for multiple drug interactions |
topic | Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4333704/ https://www.ncbi.nlm.nih.gov/pubmed/25717411 |
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