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Development and characterisation of nine polymorphic microsatellite markers for Tephrosia calophylla Bedd. (Fabaceae)
Tephrosia calophylla Bedd. (Fabaceae) is an endangered tropical plant endemic to southwestern Ghats, India. The objective of this study was to contribute to the characterisation of the diversity of this rare species, which is necessary for its future conservation. Accordingly, microsatellite markers...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4336440/ https://www.ncbi.nlm.nih.gov/pubmed/25737647 http://dx.doi.org/10.1016/j.sjbs.2014.12.009 |
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author | Parine, Narasimha Reddy Lakshmi, P. Kumar, Devinder Shaik, Jilani P. Alanazi, Mohammed Pathan, Akbar Ali Khan |
author_facet | Parine, Narasimha Reddy Lakshmi, P. Kumar, Devinder Shaik, Jilani P. Alanazi, Mohammed Pathan, Akbar Ali Khan |
author_sort | Parine, Narasimha Reddy |
collection | PubMed |
description | Tephrosia calophylla Bedd. (Fabaceae) is an endangered tropical plant endemic to southwestern Ghats, India. The objective of this study was to contribute to the characterisation of the diversity of this rare species, which is necessary for its future conservation. Accordingly, microsatellite markers were designed, and their ability to detect polymorphisms was determined. Nine microsatellite markers were developed using genomic libraries, and all of the markers were successfully amplified in 42 individuals. Three to nine alleles per locus were observed, and the heterozygosity of the loci ranged from 0.381 to 0.905. The nine newly developed polymorphic markers recognise a sufficient number of varying loci to perform further studies on the conservation and breeding of this medicinal cultivar. |
format | Online Article Text |
id | pubmed-4336440 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
record_format | MEDLINE/PubMed |
spelling | pubmed-43364402015-03-03 Development and characterisation of nine polymorphic microsatellite markers for Tephrosia calophylla Bedd. (Fabaceae) Parine, Narasimha Reddy Lakshmi, P. Kumar, Devinder Shaik, Jilani P. Alanazi, Mohammed Pathan, Akbar Ali Khan Saudi J Biol Sci Original Article Tephrosia calophylla Bedd. (Fabaceae) is an endangered tropical plant endemic to southwestern Ghats, India. The objective of this study was to contribute to the characterisation of the diversity of this rare species, which is necessary for its future conservation. Accordingly, microsatellite markers were designed, and their ability to detect polymorphisms was determined. Nine microsatellite markers were developed using genomic libraries, and all of the markers were successfully amplified in 42 individuals. Three to nine alleles per locus were observed, and the heterozygosity of the loci ranged from 0.381 to 0.905. The nine newly developed polymorphic markers recognise a sufficient number of varying loci to perform further studies on the conservation and breeding of this medicinal cultivar. 2014-12-22 2015-03 /pmc/articles/PMC4336440/ /pubmed/25737647 http://dx.doi.org/10.1016/j.sjbs.2014.12.009 Text en © 2014 The Authors http://creativecommons.org/licenses/by-nc-nd/3.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/3.0/). |
spellingShingle | Original Article Parine, Narasimha Reddy Lakshmi, P. Kumar, Devinder Shaik, Jilani P. Alanazi, Mohammed Pathan, Akbar Ali Khan Development and characterisation of nine polymorphic microsatellite markers for Tephrosia calophylla Bedd. (Fabaceae) |
title | Development and characterisation of nine polymorphic microsatellite markers for Tephrosia calophylla Bedd. (Fabaceae) |
title_full | Development and characterisation of nine polymorphic microsatellite markers for Tephrosia calophylla Bedd. (Fabaceae) |
title_fullStr | Development and characterisation of nine polymorphic microsatellite markers for Tephrosia calophylla Bedd. (Fabaceae) |
title_full_unstemmed | Development and characterisation of nine polymorphic microsatellite markers for Tephrosia calophylla Bedd. (Fabaceae) |
title_short | Development and characterisation of nine polymorphic microsatellite markers for Tephrosia calophylla Bedd. (Fabaceae) |
title_sort | development and characterisation of nine polymorphic microsatellite markers for tephrosia calophylla bedd. (fabaceae) |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4336440/ https://www.ncbi.nlm.nih.gov/pubmed/25737647 http://dx.doi.org/10.1016/j.sjbs.2014.12.009 |
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