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AcceleRater: a web application for supervised learning of behavioral modes from acceleration measurements

BACKGROUND: The study of animal movement is experiencing rapid progress in recent years, forcefully driven by technological advancement. Biologgers with Acceleration (ACC) recordings are becoming increasingly popular in the fields of animal behavior and movement ecology, for estimating energy expend...

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Autores principales: Resheff, Yehezkel S, Rotics, Shay, Harel, Roi, Spiegel, Orr, Nathan, Ran
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4337760/
https://www.ncbi.nlm.nih.gov/pubmed/25709835
http://dx.doi.org/10.1186/s40462-014-0027-0
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author Resheff, Yehezkel S
Rotics, Shay
Harel, Roi
Spiegel, Orr
Nathan, Ran
author_facet Resheff, Yehezkel S
Rotics, Shay
Harel, Roi
Spiegel, Orr
Nathan, Ran
author_sort Resheff, Yehezkel S
collection PubMed
description BACKGROUND: The study of animal movement is experiencing rapid progress in recent years, forcefully driven by technological advancement. Biologgers with Acceleration (ACC) recordings are becoming increasingly popular in the fields of animal behavior and movement ecology, for estimating energy expenditure and identifying behavior, with prospects for other potential uses as well. Supervised learning of behavioral modes from acceleration data has shown promising results in many species, and for a diverse range of behaviors. However, broad implementation of this technique in movement ecology research has been limited due to technical difficulties and complicated analysis, deterring many practitioners from applying this approach. This highlights the need to develop a broadly applicable tool for classifying behavior from acceleration data. DESCRIPTION: Here we present a free-access python-based web application called AcceleRater, for rapidly training, visualizing and using models for supervised learning of behavioral modes from ACC measurements. We introduce AcceleRater, and illustrate its successful application for classifying vulture behavioral modes from acceleration data obtained from free-ranging vultures. The seven models offered in the AcceleRater application achieved overall accuracy of between 77.68% (Decision Tree) and 84.84% (Artificial Neural Network), with a mean overall accuracy of 81.51% and standard deviation of 3.95%. Notably, variation in performance was larger between behavioral modes than between models. CONCLUSIONS: AcceleRater provides the means to identify animal behavior, offering a user-friendly tool for ACC-based behavioral annotation, which will be dynamically upgraded and maintained. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40462-014-0027-0) contains supplementary material, which is available to authorized users.
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spelling pubmed-43377602015-02-24 AcceleRater: a web application for supervised learning of behavioral modes from acceleration measurements Resheff, Yehezkel S Rotics, Shay Harel, Roi Spiegel, Orr Nathan, Ran Mov Ecol Software Article BACKGROUND: The study of animal movement is experiencing rapid progress in recent years, forcefully driven by technological advancement. Biologgers with Acceleration (ACC) recordings are becoming increasingly popular in the fields of animal behavior and movement ecology, for estimating energy expenditure and identifying behavior, with prospects for other potential uses as well. Supervised learning of behavioral modes from acceleration data has shown promising results in many species, and for a diverse range of behaviors. However, broad implementation of this technique in movement ecology research has been limited due to technical difficulties and complicated analysis, deterring many practitioners from applying this approach. This highlights the need to develop a broadly applicable tool for classifying behavior from acceleration data. DESCRIPTION: Here we present a free-access python-based web application called AcceleRater, for rapidly training, visualizing and using models for supervised learning of behavioral modes from ACC measurements. We introduce AcceleRater, and illustrate its successful application for classifying vulture behavioral modes from acceleration data obtained from free-ranging vultures. The seven models offered in the AcceleRater application achieved overall accuracy of between 77.68% (Decision Tree) and 84.84% (Artificial Neural Network), with a mean overall accuracy of 81.51% and standard deviation of 3.95%. Notably, variation in performance was larger between behavioral modes than between models. CONCLUSIONS: AcceleRater provides the means to identify animal behavior, offering a user-friendly tool for ACC-based behavioral annotation, which will be dynamically upgraded and maintained. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40462-014-0027-0) contains supplementary material, which is available to authorized users. BioMed Central 2014-12-25 /pmc/articles/PMC4337760/ /pubmed/25709835 http://dx.doi.org/10.1186/s40462-014-0027-0 Text en © Resheff et al.; licensee BioMed Central. 2014 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Software Article
Resheff, Yehezkel S
Rotics, Shay
Harel, Roi
Spiegel, Orr
Nathan, Ran
AcceleRater: a web application for supervised learning of behavioral modes from acceleration measurements
title AcceleRater: a web application for supervised learning of behavioral modes from acceleration measurements
title_full AcceleRater: a web application for supervised learning of behavioral modes from acceleration measurements
title_fullStr AcceleRater: a web application for supervised learning of behavioral modes from acceleration measurements
title_full_unstemmed AcceleRater: a web application for supervised learning of behavioral modes from acceleration measurements
title_short AcceleRater: a web application for supervised learning of behavioral modes from acceleration measurements
title_sort accelerater: a web application for supervised learning of behavioral modes from acceleration measurements
topic Software Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4337760/
https://www.ncbi.nlm.nih.gov/pubmed/25709835
http://dx.doi.org/10.1186/s40462-014-0027-0
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