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Induction and differential expression of certain novel proteins in Anabaena L31 under UV-B radiation stress

For examining how UV-B radiation alters the proteome of the N(2)-fixing cyanobacterium, Anabaena L31, we extracted proteins from cultures irradiated with UV-B + white light and controls (white light irradiated) and analyzed the proteins using two-dimensional gel electrophoresis and matrix-assisted l...

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Autores principales: Babele, Piyoosh K., Singh, Garvita, Kumar, Ashok, Tyagi, Madhu B.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4338792/
https://www.ncbi.nlm.nih.gov/pubmed/25759687
http://dx.doi.org/10.3389/fmicb.2015.00133
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author Babele, Piyoosh K.
Singh, Garvita
Kumar, Ashok
Tyagi, Madhu B.
author_facet Babele, Piyoosh K.
Singh, Garvita
Kumar, Ashok
Tyagi, Madhu B.
author_sort Babele, Piyoosh K.
collection PubMed
description For examining how UV-B radiation alters the proteome of the N(2)-fixing cyanobacterium, Anabaena L31, we extracted proteins from cultures irradiated with UV-B + white light and controls (white light irradiated) and analyzed the proteins using two-dimensional gel electrophoresis and matrix-assisted laser desorption/ionization time of flight mass spectrometry (MALDI-TOF MS). Twenty one proteins, including two hypothetical proteins (HPs) were identified and placed in eight functional categories. However several of the proteins were housekeeping proteins involved in key metabolic processes such as carbon, amino acid biosynthesis and energy metabolism, certain proteins seem to have a role in stress (antioxidative enzymes), translation, cellular processes and reductases. Two novel HPs (all3797 and all4050) were characterized in detail. These two were over-expressed after UV-B irradiation and characterized as FAS 1 (all3797) and PRC barrel-like (all4050) proteins. Bioinformatics analysis revealed that the genes of both the HPs have promoter regions as well as transcription binding sites in their upstream region (UTR). Promoters present in all3797 genes suggest their crucial role against UV-B and certain other abiotic stresses. To our knowledge these novel proteins have not been previously reported in any Anabaena strains subjected to UV-B stress. Although we have focused our study on a limited number of proteins, results obtained shed light on the highly complicated but poorly studied aspect of UV-B radiation-mediated changes in the proteome and expression of proteins in cyanobacteria.
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spelling pubmed-43387922015-03-10 Induction and differential expression of certain novel proteins in Anabaena L31 under UV-B radiation stress Babele, Piyoosh K. Singh, Garvita Kumar, Ashok Tyagi, Madhu B. Front Microbiol Microbiology For examining how UV-B radiation alters the proteome of the N(2)-fixing cyanobacterium, Anabaena L31, we extracted proteins from cultures irradiated with UV-B + white light and controls (white light irradiated) and analyzed the proteins using two-dimensional gel electrophoresis and matrix-assisted laser desorption/ionization time of flight mass spectrometry (MALDI-TOF MS). Twenty one proteins, including two hypothetical proteins (HPs) were identified and placed in eight functional categories. However several of the proteins were housekeeping proteins involved in key metabolic processes such as carbon, amino acid biosynthesis and energy metabolism, certain proteins seem to have a role in stress (antioxidative enzymes), translation, cellular processes and reductases. Two novel HPs (all3797 and all4050) were characterized in detail. These two were over-expressed after UV-B irradiation and characterized as FAS 1 (all3797) and PRC barrel-like (all4050) proteins. Bioinformatics analysis revealed that the genes of both the HPs have promoter regions as well as transcription binding sites in their upstream region (UTR). Promoters present in all3797 genes suggest their crucial role against UV-B and certain other abiotic stresses. To our knowledge these novel proteins have not been previously reported in any Anabaena strains subjected to UV-B stress. Although we have focused our study on a limited number of proteins, results obtained shed light on the highly complicated but poorly studied aspect of UV-B radiation-mediated changes in the proteome and expression of proteins in cyanobacteria. Frontiers Media S.A. 2015-02-24 /pmc/articles/PMC4338792/ /pubmed/25759687 http://dx.doi.org/10.3389/fmicb.2015.00133 Text en Copyright © 2015 Babele, Singh, Kumar and Tyagi. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Microbiology
Babele, Piyoosh K.
Singh, Garvita
Kumar, Ashok
Tyagi, Madhu B.
Induction and differential expression of certain novel proteins in Anabaena L31 under UV-B radiation stress
title Induction and differential expression of certain novel proteins in Anabaena L31 under UV-B radiation stress
title_full Induction and differential expression of certain novel proteins in Anabaena L31 under UV-B radiation stress
title_fullStr Induction and differential expression of certain novel proteins in Anabaena L31 under UV-B radiation stress
title_full_unstemmed Induction and differential expression of certain novel proteins in Anabaena L31 under UV-B radiation stress
title_short Induction and differential expression of certain novel proteins in Anabaena L31 under UV-B radiation stress
title_sort induction and differential expression of certain novel proteins in anabaena l31 under uv-b radiation stress
topic Microbiology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4338792/
https://www.ncbi.nlm.nih.gov/pubmed/25759687
http://dx.doi.org/10.3389/fmicb.2015.00133
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