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Genomic analysis to define molecular basis of aggressiveness in a mouse model of oral cancer
To investigate the molecular basis underlying aggressive behavior in oral squamous cell carcinoma (OSCC), our laboratory developed a carcinogen-induced mouse oral cancer (MOC) cell line model that encompasses the growth and metastasis spectrum of its human counterpart. We performed next-generation s...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4340082/ https://www.ncbi.nlm.nih.gov/pubmed/25729643 http://dx.doi.org/10.1016/j.gdata.2014.11.006 |
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author | Chalivendra, Varun Kanchi, Krishna Latha Onken, Michael D. Winkler, Ashley E. Mardis, Elaine Uppaluri, Ravindra |
author_facet | Chalivendra, Varun Kanchi, Krishna Latha Onken, Michael D. Winkler, Ashley E. Mardis, Elaine Uppaluri, Ravindra |
author_sort | Chalivendra, Varun |
collection | PubMed |
description | To investigate the molecular basis underlying aggressive behavior in oral squamous cell carcinoma (OSCC), our laboratory developed a carcinogen-induced mouse oral cancer (MOC) cell line model that encompasses the growth and metastasis spectrum of its human counterpart. We performed next-generation sequencing (NGS) and gene expression microarray profiles to explore the genomic and transcriptional backgrounds of the differential MOC line phenotypes, as well as, the cross-species relevance of the model. Here we describe the comparative analysis of NGS (www.ncbi.nlm.nih.gov/biosample?LinkName=bioproject_biosample_all&from_uid=247825) and expression microarray (www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE50041) data from the MOC lines and corresponding human data, as described in our recent publication [1]. |
format | Online Article Text |
id | pubmed-4340082 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-43400822015-10-19 Genomic analysis to define molecular basis of aggressiveness in a mouse model of oral cancer Chalivendra, Varun Kanchi, Krishna Latha Onken, Michael D. Winkler, Ashley E. Mardis, Elaine Uppaluri, Ravindra Genom Data Data in Brief To investigate the molecular basis underlying aggressive behavior in oral squamous cell carcinoma (OSCC), our laboratory developed a carcinogen-induced mouse oral cancer (MOC) cell line model that encompasses the growth and metastasis spectrum of its human counterpart. We performed next-generation sequencing (NGS) and gene expression microarray profiles to explore the genomic and transcriptional backgrounds of the differential MOC line phenotypes, as well as, the cross-species relevance of the model. Here we describe the comparative analysis of NGS (www.ncbi.nlm.nih.gov/biosample?LinkName=bioproject_biosample_all&from_uid=247825) and expression microarray (www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE50041) data from the MOC lines and corresponding human data, as described in our recent publication [1]. Elsevier 2014-11-18 /pmc/articles/PMC4340082/ /pubmed/25729643 http://dx.doi.org/10.1016/j.gdata.2014.11.006 Text en © 2014 The Authors http://creativecommons.org/licenses/by-nc-nd/3.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/3.0/). |
spellingShingle | Data in Brief Chalivendra, Varun Kanchi, Krishna Latha Onken, Michael D. Winkler, Ashley E. Mardis, Elaine Uppaluri, Ravindra Genomic analysis to define molecular basis of aggressiveness in a mouse model of oral cancer |
title | Genomic analysis to define molecular basis of aggressiveness in a mouse model of oral cancer |
title_full | Genomic analysis to define molecular basis of aggressiveness in a mouse model of oral cancer |
title_fullStr | Genomic analysis to define molecular basis of aggressiveness in a mouse model of oral cancer |
title_full_unstemmed | Genomic analysis to define molecular basis of aggressiveness in a mouse model of oral cancer |
title_short | Genomic analysis to define molecular basis of aggressiveness in a mouse model of oral cancer |
title_sort | genomic analysis to define molecular basis of aggressiveness in a mouse model of oral cancer |
topic | Data in Brief |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4340082/ https://www.ncbi.nlm.nih.gov/pubmed/25729643 http://dx.doi.org/10.1016/j.gdata.2014.11.006 |
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