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Genomic analysis to define molecular basis of aggressiveness in a mouse model of oral cancer

To investigate the molecular basis underlying aggressive behavior in oral squamous cell carcinoma (OSCC), our laboratory developed a carcinogen-induced mouse oral cancer (MOC) cell line model that encompasses the growth and metastasis spectrum of its human counterpart. We performed next-generation s...

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Detalles Bibliográficos
Autores principales: Chalivendra, Varun, Kanchi, Krishna Latha, Onken, Michael D., Winkler, Ashley E., Mardis, Elaine, Uppaluri, Ravindra
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4340082/
https://www.ncbi.nlm.nih.gov/pubmed/25729643
http://dx.doi.org/10.1016/j.gdata.2014.11.006
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author Chalivendra, Varun
Kanchi, Krishna Latha
Onken, Michael D.
Winkler, Ashley E.
Mardis, Elaine
Uppaluri, Ravindra
author_facet Chalivendra, Varun
Kanchi, Krishna Latha
Onken, Michael D.
Winkler, Ashley E.
Mardis, Elaine
Uppaluri, Ravindra
author_sort Chalivendra, Varun
collection PubMed
description To investigate the molecular basis underlying aggressive behavior in oral squamous cell carcinoma (OSCC), our laboratory developed a carcinogen-induced mouse oral cancer (MOC) cell line model that encompasses the growth and metastasis spectrum of its human counterpart. We performed next-generation sequencing (NGS) and gene expression microarray profiles to explore the genomic and transcriptional backgrounds of the differential MOC line phenotypes, as well as, the cross-species relevance of the model. Here we describe the comparative analysis of NGS (www.ncbi.nlm.nih.gov/biosample?LinkName=bioproject_biosample_all&from_uid=247825) and expression microarray (www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE50041) data from the MOC lines and corresponding human data, as described in our recent publication [1].
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spelling pubmed-43400822015-10-19 Genomic analysis to define molecular basis of aggressiveness in a mouse model of oral cancer Chalivendra, Varun Kanchi, Krishna Latha Onken, Michael D. Winkler, Ashley E. Mardis, Elaine Uppaluri, Ravindra Genom Data Data in Brief To investigate the molecular basis underlying aggressive behavior in oral squamous cell carcinoma (OSCC), our laboratory developed a carcinogen-induced mouse oral cancer (MOC) cell line model that encompasses the growth and metastasis spectrum of its human counterpart. We performed next-generation sequencing (NGS) and gene expression microarray profiles to explore the genomic and transcriptional backgrounds of the differential MOC line phenotypes, as well as, the cross-species relevance of the model. Here we describe the comparative analysis of NGS (www.ncbi.nlm.nih.gov/biosample?LinkName=bioproject_biosample_all&from_uid=247825) and expression microarray (www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE50041) data from the MOC lines and corresponding human data, as described in our recent publication [1]. Elsevier 2014-11-18 /pmc/articles/PMC4340082/ /pubmed/25729643 http://dx.doi.org/10.1016/j.gdata.2014.11.006 Text en © 2014 The Authors http://creativecommons.org/licenses/by-nc-nd/3.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/3.0/).
spellingShingle Data in Brief
Chalivendra, Varun
Kanchi, Krishna Latha
Onken, Michael D.
Winkler, Ashley E.
Mardis, Elaine
Uppaluri, Ravindra
Genomic analysis to define molecular basis of aggressiveness in a mouse model of oral cancer
title Genomic analysis to define molecular basis of aggressiveness in a mouse model of oral cancer
title_full Genomic analysis to define molecular basis of aggressiveness in a mouse model of oral cancer
title_fullStr Genomic analysis to define molecular basis of aggressiveness in a mouse model of oral cancer
title_full_unstemmed Genomic analysis to define molecular basis of aggressiveness in a mouse model of oral cancer
title_short Genomic analysis to define molecular basis of aggressiveness in a mouse model of oral cancer
title_sort genomic analysis to define molecular basis of aggressiveness in a mouse model of oral cancer
topic Data in Brief
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4340082/
https://www.ncbi.nlm.nih.gov/pubmed/25729643
http://dx.doi.org/10.1016/j.gdata.2014.11.006
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