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Navigating protected genomics data with UCSC Genome Browser in a Box
Summary: Genome Browser in a Box (GBiB) is a small virtual machine version of the popular University of California Santa Cruz (UCSC) Genome Browser that can be run on a researcher's own computer. Once GBiB is installed, a standard web browser is used to access the virtual server and add persona...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4341066/ https://www.ncbi.nlm.nih.gov/pubmed/25348212 http://dx.doi.org/10.1093/bioinformatics/btu712 |
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author | Haeussler, Maximilian Raney, Brian J. Hinrichs, Angie S. Clawson, Hiram Zweig, Ann S. Karolchik, Donna Casper, Jonathan Speir, Matthew L. Haussler, David Kent, W. James |
author_facet | Haeussler, Maximilian Raney, Brian J. Hinrichs, Angie S. Clawson, Hiram Zweig, Ann S. Karolchik, Donna Casper, Jonathan Speir, Matthew L. Haussler, David Kent, W. James |
author_sort | Haeussler, Maximilian |
collection | PubMed |
description | Summary: Genome Browser in a Box (GBiB) is a small virtual machine version of the popular University of California Santa Cruz (UCSC) Genome Browser that can be run on a researcher's own computer. Once GBiB is installed, a standard web browser is used to access the virtual server and add personal data files from the local hard disk. Annotation data are loaded on demand through the Internet from UCSC or can be downloaded to the local computer for faster access. Availability and implementation: Software downloads and installation instructions are freely available for non-commercial use at https://genome-store.ucsc.edu/. GBiB requires the installation of open-source software VirtualBox, available for all major operating systems, and the UCSC Genome Browser, which is open source and free for non-commercial use. Commercial use of GBiB and the Genome Browser requires a license (http://genome.ucsc.edu/license/). Contact: genome@soe.ucsc.edu |
format | Online Article Text |
id | pubmed-4341066 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-43410662015-03-10 Navigating protected genomics data with UCSC Genome Browser in a Box Haeussler, Maximilian Raney, Brian J. Hinrichs, Angie S. Clawson, Hiram Zweig, Ann S. Karolchik, Donna Casper, Jonathan Speir, Matthew L. Haussler, David Kent, W. James Bioinformatics Applications Notes Summary: Genome Browser in a Box (GBiB) is a small virtual machine version of the popular University of California Santa Cruz (UCSC) Genome Browser that can be run on a researcher's own computer. Once GBiB is installed, a standard web browser is used to access the virtual server and add personal data files from the local hard disk. Annotation data are loaded on demand through the Internet from UCSC or can be downloaded to the local computer for faster access. Availability and implementation: Software downloads and installation instructions are freely available for non-commercial use at https://genome-store.ucsc.edu/. GBiB requires the installation of open-source software VirtualBox, available for all major operating systems, and the UCSC Genome Browser, which is open source and free for non-commercial use. Commercial use of GBiB and the Genome Browser requires a license (http://genome.ucsc.edu/license/). Contact: genome@soe.ucsc.edu Oxford University Press 2015-03-01 2014-10-27 /pmc/articles/PMC4341066/ /pubmed/25348212 http://dx.doi.org/10.1093/bioinformatics/btu712 Text en © The Author 2014. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Applications Notes Haeussler, Maximilian Raney, Brian J. Hinrichs, Angie S. Clawson, Hiram Zweig, Ann S. Karolchik, Donna Casper, Jonathan Speir, Matthew L. Haussler, David Kent, W. James Navigating protected genomics data with UCSC Genome Browser in a Box |
title | Navigating protected genomics data with UCSC Genome Browser in a Box |
title_full | Navigating protected genomics data with UCSC Genome Browser in a Box |
title_fullStr | Navigating protected genomics data with UCSC Genome Browser in a Box |
title_full_unstemmed | Navigating protected genomics data with UCSC Genome Browser in a Box |
title_short | Navigating protected genomics data with UCSC Genome Browser in a Box |
title_sort | navigating protected genomics data with ucsc genome browser in a box |
topic | Applications Notes |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4341066/ https://www.ncbi.nlm.nih.gov/pubmed/25348212 http://dx.doi.org/10.1093/bioinformatics/btu712 |
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