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Navigating protected genomics data with UCSC Genome Browser in a Box

Summary: Genome Browser in a Box (GBiB) is a small virtual machine version of the popular University of California Santa Cruz (UCSC) Genome Browser that can be run on a researcher's own computer. Once GBiB is installed, a standard web browser is used to access the virtual server and add persona...

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Autores principales: Haeussler, Maximilian, Raney, Brian J., Hinrichs, Angie S., Clawson, Hiram, Zweig, Ann S., Karolchik, Donna, Casper, Jonathan, Speir, Matthew L., Haussler, David, Kent, W. James
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4341066/
https://www.ncbi.nlm.nih.gov/pubmed/25348212
http://dx.doi.org/10.1093/bioinformatics/btu712
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author Haeussler, Maximilian
Raney, Brian J.
Hinrichs, Angie S.
Clawson, Hiram
Zweig, Ann S.
Karolchik, Donna
Casper, Jonathan
Speir, Matthew L.
Haussler, David
Kent, W. James
author_facet Haeussler, Maximilian
Raney, Brian J.
Hinrichs, Angie S.
Clawson, Hiram
Zweig, Ann S.
Karolchik, Donna
Casper, Jonathan
Speir, Matthew L.
Haussler, David
Kent, W. James
author_sort Haeussler, Maximilian
collection PubMed
description Summary: Genome Browser in a Box (GBiB) is a small virtual machine version of the popular University of California Santa Cruz (UCSC) Genome Browser that can be run on a researcher's own computer. Once GBiB is installed, a standard web browser is used to access the virtual server and add personal data files from the local hard disk. Annotation data are loaded on demand through the Internet from UCSC or can be downloaded to the local computer for faster access. Availability and implementation: Software downloads and installation instructions are freely available for non-commercial use at https://genome-store.ucsc.edu/. GBiB requires the installation of open-source software VirtualBox, available for all major operating systems, and the UCSC Genome Browser, which is open source and free for non-commercial use. Commercial use of GBiB and the Genome Browser requires a license (http://genome.ucsc.edu/license/). Contact: genome@soe.ucsc.edu
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spelling pubmed-43410662015-03-10 Navigating protected genomics data with UCSC Genome Browser in a Box Haeussler, Maximilian Raney, Brian J. Hinrichs, Angie S. Clawson, Hiram Zweig, Ann S. Karolchik, Donna Casper, Jonathan Speir, Matthew L. Haussler, David Kent, W. James Bioinformatics Applications Notes Summary: Genome Browser in a Box (GBiB) is a small virtual machine version of the popular University of California Santa Cruz (UCSC) Genome Browser that can be run on a researcher's own computer. Once GBiB is installed, a standard web browser is used to access the virtual server and add personal data files from the local hard disk. Annotation data are loaded on demand through the Internet from UCSC or can be downloaded to the local computer for faster access. Availability and implementation: Software downloads and installation instructions are freely available for non-commercial use at https://genome-store.ucsc.edu/. GBiB requires the installation of open-source software VirtualBox, available for all major operating systems, and the UCSC Genome Browser, which is open source and free for non-commercial use. Commercial use of GBiB and the Genome Browser requires a license (http://genome.ucsc.edu/license/). Contact: genome@soe.ucsc.edu Oxford University Press 2015-03-01 2014-10-27 /pmc/articles/PMC4341066/ /pubmed/25348212 http://dx.doi.org/10.1093/bioinformatics/btu712 Text en © The Author 2014. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Applications Notes
Haeussler, Maximilian
Raney, Brian J.
Hinrichs, Angie S.
Clawson, Hiram
Zweig, Ann S.
Karolchik, Donna
Casper, Jonathan
Speir, Matthew L.
Haussler, David
Kent, W. James
Navigating protected genomics data with UCSC Genome Browser in a Box
title Navigating protected genomics data with UCSC Genome Browser in a Box
title_full Navigating protected genomics data with UCSC Genome Browser in a Box
title_fullStr Navigating protected genomics data with UCSC Genome Browser in a Box
title_full_unstemmed Navigating protected genomics data with UCSC Genome Browser in a Box
title_short Navigating protected genomics data with UCSC Genome Browser in a Box
title_sort navigating protected genomics data with ucsc genome browser in a box
topic Applications Notes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4341066/
https://www.ncbi.nlm.nih.gov/pubmed/25348212
http://dx.doi.org/10.1093/bioinformatics/btu712
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