Cargando…

Comparative RNA-Seq analysis reveals pervasive tissue-specific alternative polyadenylation in Caenorhabditis elegans intestine and muscles

BACKGROUND: Tissue-specific RNA plasticity broadly impacts the development, tissue identity and adaptability of all organisms, but changes in composition, expression levels and its impact on gene regulation in different somatic tissues are largely unknown. Here we developed a new method, polyA-taggi...

Descripción completa

Detalles Bibliográficos
Autores principales:	Blazie, Stephen M, Babb, Cody, Wilky, Henry, Rawls, Alan, Park, Jin G, Mangone, Marco
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2015
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4343181/ https://www.ncbi.nlm.nih.gov/pubmed/25601023 http://dx.doi.org/10.1186/s12915-015-0116-6

Ejemplares similares

Alternative Polyadenylation Directs Tissue-Specific miRNA Targeting in Caenorhabditis elegans Somatic Tissues
por: Blazie, Stephen M., et al.
Publicado: (2017)

Developmental dynamics of gene expression and alternative polyadenylation in the Caenorhabditis elegans germline
por: West, Sean M., et al.
Publicado: (2018)

Transcriptome changes during the initiation and progression of Duchenne muscular dystrophy in Caenorhabditis elegans
por: Hrach, Heather C, et al.
Publicado: (2020)

Analysis of C. elegans intestinal gene expression and polyadenylation by fluorescence-activated nuclei sorting and 3′-end-seq
por: Haenni, Simon, et al.
Publicado: (2012)

Identifying the Caenorhabditis elegans vulval transcriptome
por: Zhang, Qi, et al.
Publicado: (2022)

CPA-Perturb-seq: Multiplexed single-cell characterization of alternative polyadenylation regulators
por: Kowalski, Madeline H., et al.
Publicado: (2023)

Biased alternative polyadenylation in human tissues
por: Zhang, Haibo, et al.
Publicado: (2005)

Muscle cell attachment in Caenorhabditis elegans
Publicado: (1991)

The embryonic muscle transcriptome of Caenorhabditis elegans
por: Fox, Rebecca M, et al.
Publicado: (2007)

APA-Scan: detection and visualization of 3′-UTR alternative polyadenylation with RNA-seq and 3′-end-seq data
por: Fahmi, Naima Ahmed, et al.
Publicado: (2022)

Co-regulation of alternative splicing by diverse splicing factors in Caenorhabditis elegans
por: Barberan-Soler, Sergio, et al.
Publicado: (2011)

Pervasive Divergence of Transcriptional Gene Regulation in Caenorhabditis Nematodes
por: Barrière, Antoine, et al.
Publicado: (2014)

Alternative Polyadenylation of Tumor Suppressor Genes in Small Intestinal Neuroendocrine Tumors
por: Rehfeld, Anders, et al.
Publicado: (2014)

QAPA: a new method for the systematic analysis of alternative polyadenylation from RNA-seq data
por: Ha, Kevin C. H., et al.
Publicado: (2018)

Accurate transcriptome-wide identification and quantification of alternative polyadenylation from RNA-seq data with APAIQ
por: Long, Yongkang, et al.
Publicado: (2023)

Alternative polyadenylation of cyclooxygenase-2
por: Hall-Pogar, Tyra, et al.
Publicado: (2005)

Alternative Polyadenylation in Human Diseases
por: Chang, Jae-Woong, et al.
Publicado: (2017)

A metabolic regulatory network for the Caenorhabditis elegans intestine
por: Bhattacharya, Sushila, et al.
Publicado: (2022)

An alternative food source for metabolism and longevity studies in Caenorhabditis elegans
por: Beydoun, Safa, et al.
Publicado: (2021)

Executing cell-specific cross-linking immunoprecipitation and sequencing (seCLIP) in C. elegans
por: Blazie, Stephen M., et al.
Publicado: (2022)

Fate Specification and Tissue-specific Cell Cycle Control of the Caenorhabditis elegans Intestine
por: Segref, Alexandra, et al.
Publicado: (2010)

APAatlas: decoding alternative polyadenylation across human tissues
por: Hong, Wei, et al.
Publicado: (2020)

Accurate Profiling of Gene Expression and Alternative Polyadenylation with Whole Transcriptome Termini Site Sequencing (WTTS-Seq)
por: Zhou, Xiang, et al.
Publicado: (2016)

The C. elegans 3′ UTRome v2 resource for studying mRNA cleavage and polyadenylation, 3′-UTR biology, and miRNA targeting
por: Steber, Hannah S., et al.
Publicado: (2019)

Caenorhabditis Elegans
Publicado: (2000)

Control of intestinal bacterial proliferation in regulation of lifespan in Caenorhabditis elegans
por: Portal-Celhay, Cynthia, et al.
Publicado: (2012)

Stochastic assembly produces heterogeneous communities in the Caenorhabditis elegans intestine
por: Vega, Nicole M., et al.
Publicado: (2017)

Alternative Polyadenylation: Methods, Findings, and Impacts
por: Chen, Wei, et al.
Publicado: (2017)

Editorial: Alternative Polyadenylation in Development and Disease
por: Pai, Athma A., et al.
Publicado: (2022)

Regulation of alternative splicing and polyadenylation in neurons
por: Lee, Seungjae, et al.
Publicado: (2023)

Computer-Assisted Transgenesis of Caenorhabditis elegans for Deep Phenotyping
por: Gilleland, Cody L., et al.
Publicado: (2015)

An Alternative STAT Signaling Pathway Acts in Viral Immunity in Caenorhabditis elegans
por: Tanguy, Mélanie, et al.
Publicado: (2017)

scAPAmod: Profiling Alternative Polyadenylation Modalities in Single Cells from Single-Cell RNA-Seq Data
por: Qian, Lingwu, et al.
Publicado: (2022)

Genome-wide mapping of polyadenylation sites in fission yeast reveals widespread alternative polyadenylation
por: Mata, Juan
Publicado: (2013)

Polyadenylation is the key aspect of GLD-2 function in C. elegans
por: Nousch, Marco, et al.
Publicado: (2017)

Integrative analysis of Iso-Seq and RNA-seq reveals dynamic changes of alternative promoter, alternative splicing and alternative polyadenylation during Angiotensin II-induced senescence in rat primary aortic endothelial cells
por: Wen, Haimei, et al.
Publicado: (2023)

Production of YP170 Vitellogenins Promotes Intestinal Senescence in Caenorhabditis elegans
por: Sornda, Thanet, et al.
Publicado: (2019)

Ferritin is regulated by a neuro-intestinal axis in the nematode Caenorhabditis elegans
por: Romero-Afrima, Leonor, et al.
Publicado: (2019)

Fusion and expansion of vitellogenin vesicles during Caenorhabditis elegans intestinal senescence
por: Zhai, Chao, et al.
Publicado: (2022)

The Nucleolus of Caenorhabditis elegans
por: Lee, Li-Wei, et al.
Publicado: (2012)

Cannot write session to /tmp/vufind_sessions/sess_grgpuov3lsfm84av889g42208e