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Enhancing physiologic simulations using supervised learning on coarse mesh solutions

Computational modelling of physical and biochemical processes has emerged as a means of evaluating medical devices, offering new insights that explain current performance, inform future designs and even enable personalized use. Yet resource limitations force one to compromise with reduced order comp...

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Detalles Bibliográficos
Autores principales: Kolandaivelu, Kumaran, O'Brien, Caroline C., Shazly, Tarek, Edelman, Elazer R., Kolachalama, Vijaya B.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Royal Society 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4345474/
https://www.ncbi.nlm.nih.gov/pubmed/25652458
http://dx.doi.org/10.1098/rsif.2014.1073
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author Kolandaivelu, Kumaran
O'Brien, Caroline C.
Shazly, Tarek
Edelman, Elazer R.
Kolachalama, Vijaya B.
author_facet Kolandaivelu, Kumaran
O'Brien, Caroline C.
Shazly, Tarek
Edelman, Elazer R.
Kolachalama, Vijaya B.
author_sort Kolandaivelu, Kumaran
collection PubMed
description Computational modelling of physical and biochemical processes has emerged as a means of evaluating medical devices, offering new insights that explain current performance, inform future designs and even enable personalized use. Yet resource limitations force one to compromise with reduced order computational models and idealized assumptions that yield either qualitative descriptions or approximate, quantitative solutions to problems of interest. Considering endovascular drug delivery as an exemplary scenario, we used a supervised machine learning framework to process data generated from low fidelity coarse meshes and predict high fidelity solutions on refined mesh configurations. We considered two models simulating drug delivery to the arterial wall: (i) two-dimensional drug-coated balloons and (ii) three-dimensional drug-eluting stents. Simulations were performed on computational mesh configurations of increasing density. Supervised learners based on Gaussian process modelling were constructed from combinations of coarse mesh setting solutions of drug concentrations and nearest neighbourhood distance information as inputs, and higher fidelity mesh solutions as outputs. These learners were then used as computationally inexpensive surrogates to extend predictions using low fidelity information to higher levels of mesh refinement. The cross-validated, supervised learner-based predictions improved fidelity as compared with computational simulations performed at coarse level meshes—a result consistent across all outputs and computational models considered. Supervised learning on coarse mesh solutions can augment traditional physics-based modelling of complex physiologic phenomena. By obtaining efficient solutions at a fraction of the computational cost, this framework has the potential to transform how modelling approaches can be applied in the evaluation of medical technologies and their real-time administration in an increasingly personalized fashion.
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spelling pubmed-43454742015-03-11 Enhancing physiologic simulations using supervised learning on coarse mesh solutions Kolandaivelu, Kumaran O'Brien, Caroline C. Shazly, Tarek Edelman, Elazer R. Kolachalama, Vijaya B. J R Soc Interface Research Articles Computational modelling of physical and biochemical processes has emerged as a means of evaluating medical devices, offering new insights that explain current performance, inform future designs and even enable personalized use. Yet resource limitations force one to compromise with reduced order computational models and idealized assumptions that yield either qualitative descriptions or approximate, quantitative solutions to problems of interest. Considering endovascular drug delivery as an exemplary scenario, we used a supervised machine learning framework to process data generated from low fidelity coarse meshes and predict high fidelity solutions on refined mesh configurations. We considered two models simulating drug delivery to the arterial wall: (i) two-dimensional drug-coated balloons and (ii) three-dimensional drug-eluting stents. Simulations were performed on computational mesh configurations of increasing density. Supervised learners based on Gaussian process modelling were constructed from combinations of coarse mesh setting solutions of drug concentrations and nearest neighbourhood distance information as inputs, and higher fidelity mesh solutions as outputs. These learners were then used as computationally inexpensive surrogates to extend predictions using low fidelity information to higher levels of mesh refinement. The cross-validated, supervised learner-based predictions improved fidelity as compared with computational simulations performed at coarse level meshes—a result consistent across all outputs and computational models considered. Supervised learning on coarse mesh solutions can augment traditional physics-based modelling of complex physiologic phenomena. By obtaining efficient solutions at a fraction of the computational cost, this framework has the potential to transform how modelling approaches can be applied in the evaluation of medical technologies and their real-time administration in an increasingly personalized fashion. The Royal Society 2015-03-06 /pmc/articles/PMC4345474/ /pubmed/25652458 http://dx.doi.org/10.1098/rsif.2014.1073 Text en http://creativecommons.org/licenses/by/4.0/ © 2015 The Authors. Published by the Royal Society under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/, which permits unrestricted use, provided the original author and source are credited.
spellingShingle Research Articles
Kolandaivelu, Kumaran
O'Brien, Caroline C.
Shazly, Tarek
Edelman, Elazer R.
Kolachalama, Vijaya B.
Enhancing physiologic simulations using supervised learning on coarse mesh solutions
title Enhancing physiologic simulations using supervised learning on coarse mesh solutions
title_full Enhancing physiologic simulations using supervised learning on coarse mesh solutions
title_fullStr Enhancing physiologic simulations using supervised learning on coarse mesh solutions
title_full_unstemmed Enhancing physiologic simulations using supervised learning on coarse mesh solutions
title_short Enhancing physiologic simulations using supervised learning on coarse mesh solutions
title_sort enhancing physiologic simulations using supervised learning on coarse mesh solutions
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4345474/
https://www.ncbi.nlm.nih.gov/pubmed/25652458
http://dx.doi.org/10.1098/rsif.2014.1073
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