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Mechanical catalysis on the centimetre scale

Enzymes play important roles in catalysing biochemical transaction paths, acting as logical machines through the morphology of the processes. A key challenge in elucidating the nature of these systems, and for engineering manufacturing methods inspired by biochemical reactions, is to attain a compre...

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Autores principales: Miyashita, Shuhei, Audretsch, Christof, Nagy, Zoltán, Füchslin, Rudolf M., Pfeifer, Rolf
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Royal Society 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4345491/
https://www.ncbi.nlm.nih.gov/pubmed/25652461
http://dx.doi.org/10.1098/rsif.2014.1271
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author Miyashita, Shuhei
Audretsch, Christof
Nagy, Zoltán
Füchslin, Rudolf M.
Pfeifer, Rolf
author_facet Miyashita, Shuhei
Audretsch, Christof
Nagy, Zoltán
Füchslin, Rudolf M.
Pfeifer, Rolf
author_sort Miyashita, Shuhei
collection PubMed
description Enzymes play important roles in catalysing biochemical transaction paths, acting as logical machines through the morphology of the processes. A key challenge in elucidating the nature of these systems, and for engineering manufacturing methods inspired by biochemical reactions, is to attain a comprehensive understanding of the stereochemical ground rules of enzymatic reactions. Here, we present a model of catalysis that can be performed magnetically by centimetre-sized passive floating units. The designed system, which is equipped with permanent magnets only, passively obeys the local causalities imposed by magnetic interactions, albeit it shows a spatial behaviour and an energy profile analogous to those of biochemical enzymes. In this process, the enzyme units trigger physical conformation changes of the target by levelling out the magnetic potential barrier (activation potential) to a funnel type and, thus, induce cascading conformation changes of the targeted substrate units reacting in parallel. The inhibitor units, conversely, suppress such changes by increasing the potential. Because the model is purely mechanical and established on a physics basis in the absence of turbulence, each performance can be explained by the morphology of the unit, extending the definition of catalysis to systems of alternative scales.
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spelling pubmed-43454912015-03-11 Mechanical catalysis on the centimetre scale Miyashita, Shuhei Audretsch, Christof Nagy, Zoltán Füchslin, Rudolf M. Pfeifer, Rolf J R Soc Interface Research Articles Enzymes play important roles in catalysing biochemical transaction paths, acting as logical machines through the morphology of the processes. A key challenge in elucidating the nature of these systems, and for engineering manufacturing methods inspired by biochemical reactions, is to attain a comprehensive understanding of the stereochemical ground rules of enzymatic reactions. Here, we present a model of catalysis that can be performed magnetically by centimetre-sized passive floating units. The designed system, which is equipped with permanent magnets only, passively obeys the local causalities imposed by magnetic interactions, albeit it shows a spatial behaviour and an energy profile analogous to those of biochemical enzymes. In this process, the enzyme units trigger physical conformation changes of the target by levelling out the magnetic potential barrier (activation potential) to a funnel type and, thus, induce cascading conformation changes of the targeted substrate units reacting in parallel. The inhibitor units, conversely, suppress such changes by increasing the potential. Because the model is purely mechanical and established on a physics basis in the absence of turbulence, each performance can be explained by the morphology of the unit, extending the definition of catalysis to systems of alternative scales. The Royal Society 2015-03-06 /pmc/articles/PMC4345491/ /pubmed/25652461 http://dx.doi.org/10.1098/rsif.2014.1271 Text en http://creativecommons.org/licenses/by/4.0/ © 2015 The Authors. Published by the Royal Society under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/, which permits unrestricted use, provided the original author and source are credited.
spellingShingle Research Articles
Miyashita, Shuhei
Audretsch, Christof
Nagy, Zoltán
Füchslin, Rudolf M.
Pfeifer, Rolf
Mechanical catalysis on the centimetre scale
title Mechanical catalysis on the centimetre scale
title_full Mechanical catalysis on the centimetre scale
title_fullStr Mechanical catalysis on the centimetre scale
title_full_unstemmed Mechanical catalysis on the centimetre scale
title_short Mechanical catalysis on the centimetre scale
title_sort mechanical catalysis on the centimetre scale
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4345491/
https://www.ncbi.nlm.nih.gov/pubmed/25652461
http://dx.doi.org/10.1098/rsif.2014.1271
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