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Mechanical catalysis on the centimetre scale
Enzymes play important roles in catalysing biochemical transaction paths, acting as logical machines through the morphology of the processes. A key challenge in elucidating the nature of these systems, and for engineering manufacturing methods inspired by biochemical reactions, is to attain a compre...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Royal Society
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4345491/ https://www.ncbi.nlm.nih.gov/pubmed/25652461 http://dx.doi.org/10.1098/rsif.2014.1271 |
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author | Miyashita, Shuhei Audretsch, Christof Nagy, Zoltán Füchslin, Rudolf M. Pfeifer, Rolf |
author_facet | Miyashita, Shuhei Audretsch, Christof Nagy, Zoltán Füchslin, Rudolf M. Pfeifer, Rolf |
author_sort | Miyashita, Shuhei |
collection | PubMed |
description | Enzymes play important roles in catalysing biochemical transaction paths, acting as logical machines through the morphology of the processes. A key challenge in elucidating the nature of these systems, and for engineering manufacturing methods inspired by biochemical reactions, is to attain a comprehensive understanding of the stereochemical ground rules of enzymatic reactions. Here, we present a model of catalysis that can be performed magnetically by centimetre-sized passive floating units. The designed system, which is equipped with permanent magnets only, passively obeys the local causalities imposed by magnetic interactions, albeit it shows a spatial behaviour and an energy profile analogous to those of biochemical enzymes. In this process, the enzyme units trigger physical conformation changes of the target by levelling out the magnetic potential barrier (activation potential) to a funnel type and, thus, induce cascading conformation changes of the targeted substrate units reacting in parallel. The inhibitor units, conversely, suppress such changes by increasing the potential. Because the model is purely mechanical and established on a physics basis in the absence of turbulence, each performance can be explained by the morphology of the unit, extending the definition of catalysis to systems of alternative scales. |
format | Online Article Text |
id | pubmed-4345491 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | The Royal Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-43454912015-03-11 Mechanical catalysis on the centimetre scale Miyashita, Shuhei Audretsch, Christof Nagy, Zoltán Füchslin, Rudolf M. Pfeifer, Rolf J R Soc Interface Research Articles Enzymes play important roles in catalysing biochemical transaction paths, acting as logical machines through the morphology of the processes. A key challenge in elucidating the nature of these systems, and for engineering manufacturing methods inspired by biochemical reactions, is to attain a comprehensive understanding of the stereochemical ground rules of enzymatic reactions. Here, we present a model of catalysis that can be performed magnetically by centimetre-sized passive floating units. The designed system, which is equipped with permanent magnets only, passively obeys the local causalities imposed by magnetic interactions, albeit it shows a spatial behaviour and an energy profile analogous to those of biochemical enzymes. In this process, the enzyme units trigger physical conformation changes of the target by levelling out the magnetic potential barrier (activation potential) to a funnel type and, thus, induce cascading conformation changes of the targeted substrate units reacting in parallel. The inhibitor units, conversely, suppress such changes by increasing the potential. Because the model is purely mechanical and established on a physics basis in the absence of turbulence, each performance can be explained by the morphology of the unit, extending the definition of catalysis to systems of alternative scales. The Royal Society 2015-03-06 /pmc/articles/PMC4345491/ /pubmed/25652461 http://dx.doi.org/10.1098/rsif.2014.1271 Text en http://creativecommons.org/licenses/by/4.0/ © 2015 The Authors. Published by the Royal Society under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/, which permits unrestricted use, provided the original author and source are credited. |
spellingShingle | Research Articles Miyashita, Shuhei Audretsch, Christof Nagy, Zoltán Füchslin, Rudolf M. Pfeifer, Rolf Mechanical catalysis on the centimetre scale |
title | Mechanical catalysis on the centimetre scale |
title_full | Mechanical catalysis on the centimetre scale |
title_fullStr | Mechanical catalysis on the centimetre scale |
title_full_unstemmed | Mechanical catalysis on the centimetre scale |
title_short | Mechanical catalysis on the centimetre scale |
title_sort | mechanical catalysis on the centimetre scale |
topic | Research Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4345491/ https://www.ncbi.nlm.nih.gov/pubmed/25652461 http://dx.doi.org/10.1098/rsif.2014.1271 |
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