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Fine-scale malaria risk mapping from routine aggregated case data

BACKGROUND: Mapping malaria risk is an integral component of efficient resource allocation. Routine health facility data are convenient to collect, but without information on the locations at which transmission occurred, their utility for predicting variation in risk at a sub-catchment level is pres...

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Autores principales: Sturrock, Hugh JW, Cohen, Justin M, Keil, Petr, Tatem, Andrew J, Le Menach, Arnaud, Ntshalintshali, Nyasatu E, Hsiang, Michelle S, Gosling, Roland D
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4349235/
https://www.ncbi.nlm.nih.gov/pubmed/25366929
http://dx.doi.org/10.1186/1475-2875-13-421
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author Sturrock, Hugh JW
Cohen, Justin M
Keil, Petr
Tatem, Andrew J
Le Menach, Arnaud
Ntshalintshali, Nyasatu E
Hsiang, Michelle S
Gosling, Roland D
author_facet Sturrock, Hugh JW
Cohen, Justin M
Keil, Petr
Tatem, Andrew J
Le Menach, Arnaud
Ntshalintshali, Nyasatu E
Hsiang, Michelle S
Gosling, Roland D
author_sort Sturrock, Hugh JW
collection PubMed
description BACKGROUND: Mapping malaria risk is an integral component of efficient resource allocation. Routine health facility data are convenient to collect, but without information on the locations at which transmission occurred, their utility for predicting variation in risk at a sub-catchment level is presently unclear. METHODS: Using routinely collected health facility level case data in Swaziland between 2011–2013, and fine scale environmental and ecological variables, this study explores the use of a hierarchical Bayesian modelling framework for downscaling risk maps from health facility catchment level to a fine scale (1 km x 1 km). Fine scale predictions were validated using known household locations of cases and a random sample of points to act as pseudo-controls. RESULTS: Results show that fine-scale predictions were able to discriminate between cases and pseudo-controls with an AUC value of 0.84. When scaled up to catchment level, predicted numbers of cases per health facility showed broad correspondence with observed numbers of cases with little bias, with 84 of the 101 health facilities with zero cases correctly predicted as having zero cases. CONCLUSIONS: This method holds promise for helping countries in pre-elimination and elimination stages use health facility level data to produce accurate risk maps at finer scales. Further validation in other transmission settings and an evaluation of the operational value of the approach is necessary. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/1475-2875-13-421) contains supplementary material, which is available to authorized users.
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spelling pubmed-43492352015-03-05 Fine-scale malaria risk mapping from routine aggregated case data Sturrock, Hugh JW Cohen, Justin M Keil, Petr Tatem, Andrew J Le Menach, Arnaud Ntshalintshali, Nyasatu E Hsiang, Michelle S Gosling, Roland D Malar J Research BACKGROUND: Mapping malaria risk is an integral component of efficient resource allocation. Routine health facility data are convenient to collect, but without information on the locations at which transmission occurred, their utility for predicting variation in risk at a sub-catchment level is presently unclear. METHODS: Using routinely collected health facility level case data in Swaziland between 2011–2013, and fine scale environmental and ecological variables, this study explores the use of a hierarchical Bayesian modelling framework for downscaling risk maps from health facility catchment level to a fine scale (1 km x 1 km). Fine scale predictions were validated using known household locations of cases and a random sample of points to act as pseudo-controls. RESULTS: Results show that fine-scale predictions were able to discriminate between cases and pseudo-controls with an AUC value of 0.84. When scaled up to catchment level, predicted numbers of cases per health facility showed broad correspondence with observed numbers of cases with little bias, with 84 of the 101 health facilities with zero cases correctly predicted as having zero cases. CONCLUSIONS: This method holds promise for helping countries in pre-elimination and elimination stages use health facility level data to produce accurate risk maps at finer scales. Further validation in other transmission settings and an evaluation of the operational value of the approach is necessary. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/1475-2875-13-421) contains supplementary material, which is available to authorized users. BioMed Central 2014-11-03 /pmc/articles/PMC4349235/ /pubmed/25366929 http://dx.doi.org/10.1186/1475-2875-13-421 Text en © Sturrock et al.; licensee BioMed Central Ltd. 2014 This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Research
Sturrock, Hugh JW
Cohen, Justin M
Keil, Petr
Tatem, Andrew J
Le Menach, Arnaud
Ntshalintshali, Nyasatu E
Hsiang, Michelle S
Gosling, Roland D
Fine-scale malaria risk mapping from routine aggregated case data
title Fine-scale malaria risk mapping from routine aggregated case data
title_full Fine-scale malaria risk mapping from routine aggregated case data
title_fullStr Fine-scale malaria risk mapping from routine aggregated case data
title_full_unstemmed Fine-scale malaria risk mapping from routine aggregated case data
title_short Fine-scale malaria risk mapping from routine aggregated case data
title_sort fine-scale malaria risk mapping from routine aggregated case data
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4349235/
https://www.ncbi.nlm.nih.gov/pubmed/25366929
http://dx.doi.org/10.1186/1475-2875-13-421
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