Cargando…

SCNVSim: somatic copy number variation and structure variation simulator

BACKGROUND: Somatically acquired structure variations (SVs) and copy number variations (CNVs) can induce genetic changes that are directly related to tumor genesis. Somatic SV/CNV detection using next-generation sequencing (NGS) data still faces major challenges introduced by tumor sample characteri...

Descripción completa

Detalles Bibliográficos
Autores principales:	Qin, Maochun, Liu, Biao, Conroy, Jeffrey M, Morrison, Carl D, Hu, Qiang, Cheng, Yubo, Murakami, Mitsuko, Odunsi, Adekunle O, Johnson, Candace S, Wei, Lei, Liu, Song, Wang, Jianmin
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2015
Materias:	Software
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4349766/ https://www.ncbi.nlm.nih.gov/pubmed/25886838 http://dx.doi.org/10.1186/s12859-015-0502-7

Ejemplares similares

cnvCurator: an interactive visualization and editing tool for somatic copy number variations
por: Ma, Lingnan, et al.
Publicado: (2015)

Computational methods for detecting copy number variations in cancer genome using next generation sequencing: principles and challenges
por: Liu, Biao, et al.
Publicado: (2013)

MAC: identifying and correcting annotation for multi-nucleotide variations
por: Wei, Lei, et al.
Publicado: (2015)

Structural variation discovery in the cancer genome using next generation sequencing: Computational solutions and perspectives
por: Liu, Biao, et al.
Publicado: (2015)

Anaconda: AN automated pipeline for somatic COpy Number variation Detection and Annotation from tumor exome sequencing data
por: Gao, Jianing, et al.
Publicado: (2017)

X-CNV: genome-wide prediction of the pathogenicity of copy number variations
por: Zhang, Li, et al.
Publicado: (2021)

Evaluation of copy number variation detection for a SNP array platform
por: Zhang, Xin, et al.
Publicado: (2014)

MONTAGE: a new tool for high-throughput detection of mosaic copy number variation
por: Glessner, Joseph T., et al.
Publicado: (2021)

CONAN: copy number variation analysis software for genome-wide association studies
por: Forer, Lukas, et al.
Publicado: (2010)

SubPatCNV: approximate subspace pattern mining for mapping copy-number variations
por: Johnson, Nicholas, et al.
Publicado: (2015)

CNV Workshop: an integrated platform for high-throughput copy number variation discovery and clinical diagnostics
por: Gai, Xiaowu, et al.
Publicado: (2010)

Y(MAP): a pipeline for visualization of copy number variation and loss of heterozygosity in eukaryotic pathogens
por: Abbey, Darren A, et al.
Publicado: (2014)

CoNVaQ: a web tool for copy number variation-based association studies
por: Larsen, Simon Jonas, et al.
Publicado: (2018)

Detecting copy number variation in next generation sequencing data from diagnostic gene panels
por: Singh, Ashish Kumar, et al.
Publicado: (2021)

Hecaton: reliably detecting copy number variation in plant genomes using short read sequencing data
por: Wijfjes, Raúl Y., et al.
Publicado: (2019)

Short somatic alterations at the site of copy number variation in breast cancer
por: Murakami, Fumi, et al.
Publicado: (2020)

ConanVarvar: a versatile tool for the detection of large syndromic copy number variation from whole-genome sequencing data
por: Gudkov, Mikhail, et al.
Publicado: (2023)

OSAT: a tool for sample-to-batch allocations in genomics experiments
por: Yan, Li, et al.
Publicado: (2012)

Controlled Somatic and Germline Copy Number Variation in the Mouse Model
por: Hérault, Yann, et al.
Publicado: (2010)

FUSIM: a software tool for simulating fusion transcripts
por: Bruno, Andrew E, et al.
Publicado: (2013)

A survey of analysis software for array-comparative genomic hybridisation studies to detect copy number variation
por: Karimpour-Fard, Anis, et al.
Publicado: (2010)

Partitioning of copy-number genotypes in pedigrees
por: Perreault, Louis-Philippe Lemieux, et al.
Publicado: (2010)

inCNV: An Integrated Analysis Tool for Copy Number Variation on Whole Exome Sequencing
por: Chanwigoon, Saowwapark, et al.
Publicado: (2020)

The Human Genome Puzzle – the Role of Copy Number Variation in Somatic Mosaicism
por: Mkrtchyan, Hasmik, et al.
Publicado: (2010)

A Deep Learning Approach for Detecting Copy Number Variation in Next-Generation Sequencing Data
por: Hill, Tom, et al.
Publicado: (2019)

Somatic mosaicism for copy-neutral loss of heterozygosity and DNA copy number variations in the human genome
por: Žilina, Olga, et al.
Publicado: (2015)

An accessible GenePattern notebook for the copy number variation analysis of Illumina Infinium DNA methylation arrays
por: Mah, Clarence K., et al.
Publicado: (2018)

Copy number variation in the Framingham Heart Study
por: Shtir, Corina, et al.
Publicado: (2009)

Segmentum: a tool for copy number analysis of cancer genomes
por: Afyounian, Ebrahim, et al.
Publicado: (2017)

Copy number variations and cancer
por: Shlien, Adam, et al.
Publicado: (2009)

Copy number variations and stroke
por: Colaianni, Valeria, et al.
Publicado: (2016)

Copy Number Variations and Schizophrenia
por: Szecówka, Kamila, et al.
Publicado: (2022)

Copy Number Variation and Osteoporosis
por: Lovšin, Nika
Publicado: (2023)

CGHpower: exploring sample size calculations for chromosomal copy number experiments
por: Scheinin, Ilari, et al.
Publicado: (2010)

Copynumber: Efficient algorithms for single- and multi-track copy number segmentation
por: Nilsen, Gro, et al.
Publicado: (2012)

Completing a genomic characterisation of microscopic tumour samples with copy number
por: Nulsen, Joel, et al.
Publicado: (2023)

Assessment of megabase-scale somatic copy number variation using single-cell sequencing
por: Knouse, Kristin A., et al.
Publicado: (2016)

Somatic mutations and copy number variations in breast cancers with heterogeneous HER2 amplification
por: Van Bockstal, Mieke R., et al.
Publicado: (2020)

A Preliminary Study of Copy Number Variation in Tibetans
por: Zhang, Yong-Biao, et al.
Publicado: (2012)

iGC—an integrated analysis package of gene expression and copy number alteration
por: Lai, Yi-Pin, et al.
Publicado: (2017)

Cannot write session to /tmp/vufind_sessions/sess_9irv4l71rvbp0bnrjtathu3nt9