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16SrRNA sequencing of Dye decolorizing bacteria isolated from Soil

Dye׳s residues in textile effluents are hazardous for humans and animals health. Such pollutants can be degraded into non-harmful molecules using biological approaches that are considered cheaper and ecologically safer. Isolated 15 bacterial cultures from soil that could be used in biological system...

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Autores principales: Kumar, Avnish, Asthana, Monika, Gupta, Poonam, Yadav, Shweta, Sharma, Deepti, Singh, Km Neeraj, Kumar, Sunil
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Biomedical Informatics 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4349931/
https://www.ncbi.nlm.nih.gov/pubmed/25780272
http://dx.doi.org/10.6026/97320630011001
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author Kumar, Avnish
Asthana, Monika
Gupta, Poonam
Yadav, Shweta
Sharma, Deepti
Singh, Km Neeraj
Kumar, Sunil
author_facet Kumar, Avnish
Asthana, Monika
Gupta, Poonam
Yadav, Shweta
Sharma, Deepti
Singh, Km Neeraj
Kumar, Sunil
author_sort Kumar, Avnish
collection PubMed
description Dye׳s residues in textile effluents are hazardous for humans and animals health. Such pollutants can be degraded into non-harmful molecules using biological approaches that are considered cheaper and ecologically safer. Isolated 15 bacterial cultures from soil that could be used in biological system were showed decolorization capacity for Acid Green dye (33.9% to 94.0%) using thin layer chromatography and broth culture method. The most promising cultures (AMC3) to decolorize Acid green Dye (94.6%) was re-coded as NSDSUAM for submitting at IMTECH, Chandigarh for sequencing. The 16SrRNA sequencing suggested that it can be a variant of Pseudomonas geniculata (99.85% identical similarity) with difference of 2 base pairs to reference strain Pseudomonas geniculata ATCC 19374(T). Thus present study proposed dye decolorizing efficiency of the isolated strain of Pseudomonas geniculata that was previously unnoticed. The sequence is deposited in NCBI GenBank with the accession number KP238100.
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spelling pubmed-43499312015-03-16 16SrRNA sequencing of Dye decolorizing bacteria isolated from Soil Kumar, Avnish Asthana, Monika Gupta, Poonam Yadav, Shweta Sharma, Deepti Singh, Km Neeraj Kumar, Sunil Bioinformation Hypothesis Dye׳s residues in textile effluents are hazardous for humans and animals health. Such pollutants can be degraded into non-harmful molecules using biological approaches that are considered cheaper and ecologically safer. Isolated 15 bacterial cultures from soil that could be used in biological system were showed decolorization capacity for Acid Green dye (33.9% to 94.0%) using thin layer chromatography and broth culture method. The most promising cultures (AMC3) to decolorize Acid green Dye (94.6%) was re-coded as NSDSUAM for submitting at IMTECH, Chandigarh for sequencing. The 16SrRNA sequencing suggested that it can be a variant of Pseudomonas geniculata (99.85% identical similarity) with difference of 2 base pairs to reference strain Pseudomonas geniculata ATCC 19374(T). Thus present study proposed dye decolorizing efficiency of the isolated strain of Pseudomonas geniculata that was previously unnoticed. The sequence is deposited in NCBI GenBank with the accession number KP238100. Biomedical Informatics 2015-01-30 /pmc/articles/PMC4349931/ /pubmed/25780272 http://dx.doi.org/10.6026/97320630011001 Text en © 2015 Biomedical Informatics This is an open-access article, which permits unrestricted use, distribution, and reproduction in any medium, for non-commercial purposes, provided the original author and source are credited.
spellingShingle Hypothesis
Kumar, Avnish
Asthana, Monika
Gupta, Poonam
Yadav, Shweta
Sharma, Deepti
Singh, Km Neeraj
Kumar, Sunil
16SrRNA sequencing of Dye decolorizing bacteria isolated from Soil
title 16SrRNA sequencing of Dye decolorizing bacteria isolated from Soil
title_full 16SrRNA sequencing of Dye decolorizing bacteria isolated from Soil
title_fullStr 16SrRNA sequencing of Dye decolorizing bacteria isolated from Soil
title_full_unstemmed 16SrRNA sequencing of Dye decolorizing bacteria isolated from Soil
title_short 16SrRNA sequencing of Dye decolorizing bacteria isolated from Soil
title_sort 16srrna sequencing of dye decolorizing bacteria isolated from soil
topic Hypothesis
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4349931/
https://www.ncbi.nlm.nih.gov/pubmed/25780272
http://dx.doi.org/10.6026/97320630011001
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