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Crystal structure of 3-[(4-benzylpiperazin-1-yl)methyl]-5-(thiophen-2-yl)-2,3-dihydro-1,3,4-oxadiazole-2-thione
The title 1,3,4-oxadiazole-2-thione derivative, C(18)H(20)N(4)OS(2), crystallized with two independent molecules (A and B) in the asymmetric unit. The 2-thienyl rings in both molecules are rotationally disordered over two orientations by approximately 180° about the single C—C bond that connects...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4350721/ https://www.ncbi.nlm.nih.gov/pubmed/25844234 http://dx.doi.org/10.1107/S2056989015002273 |
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author | Al-Omary, Fatmah A. M. El-Emam, Ali A. Ghabbour, Hazem A. Chidan Kumar, C. S. Quah, Ching Kheng Fun, Hoong-Kun |
author_facet | Al-Omary, Fatmah A. M. El-Emam, Ali A. Ghabbour, Hazem A. Chidan Kumar, C. S. Quah, Ching Kheng Fun, Hoong-Kun |
author_sort | Al-Omary, Fatmah A. M. |
collection | PubMed |
description | The title 1,3,4-oxadiazole-2-thione derivative, C(18)H(20)N(4)OS(2), crystallized with two independent molecules (A and B) in the asymmetric unit. The 2-thienyl rings in both molecules are rotationally disordered over two orientations by approximately 180° about the single C—C bond that connects it to the oxadiazole thione ring; the ratios of site occupancies for the major and minor components were fixed in the structure refinement at 0.8:0.2 and 0.9:0.1 in molecules A and B, respectively. The 1,3,4-oxadiazole-2-thione ring forms dihedral angles of 7.71 (16), 10.0 (11) and 77.50 (12)° (molecule A), and 6.5 (3), 6.0 (9) and 55.30 (12)° (molecule B) with the major and minor parts of the disordered thiophene ring and the mean plane of the adjacent piperazine ring, respectively, resulting in approximately V-shaped conformations for the molecules. The piperazine ring in both molecules adopts a chair conformation. The terminal benzene ring is inclined towards the mean plane of the piperazine ring with N—C—C—C torsion angles of −58.2 (3) and −66.2 (3)° in molecules A and B, respectively. In the crystal, no intermolecular hydrogen bonds are observed. The crystal packing features short S⋯S contacts [3.4792 (9) Å] and π–π interactions [3.661 (3), 3.664 (11) and 3.5727 (10) Å], producing a three-dimensional network. |
format | Online Article Text |
id | pubmed-4350721 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-43507212015-04-03 Crystal structure of 3-[(4-benzylpiperazin-1-yl)methyl]-5-(thiophen-2-yl)-2,3-dihydro-1,3,4-oxadiazole-2-thione Al-Omary, Fatmah A. M. El-Emam, Ali A. Ghabbour, Hazem A. Chidan Kumar, C. S. Quah, Ching Kheng Fun, Hoong-Kun Acta Crystallogr E Crystallogr Commun Data Reports The title 1,3,4-oxadiazole-2-thione derivative, C(18)H(20)N(4)OS(2), crystallized with two independent molecules (A and B) in the asymmetric unit. The 2-thienyl rings in both molecules are rotationally disordered over two orientations by approximately 180° about the single C—C bond that connects it to the oxadiazole thione ring; the ratios of site occupancies for the major and minor components were fixed in the structure refinement at 0.8:0.2 and 0.9:0.1 in molecules A and B, respectively. The 1,3,4-oxadiazole-2-thione ring forms dihedral angles of 7.71 (16), 10.0 (11) and 77.50 (12)° (molecule A), and 6.5 (3), 6.0 (9) and 55.30 (12)° (molecule B) with the major and minor parts of the disordered thiophene ring and the mean plane of the adjacent piperazine ring, respectively, resulting in approximately V-shaped conformations for the molecules. The piperazine ring in both molecules adopts a chair conformation. The terminal benzene ring is inclined towards the mean plane of the piperazine ring with N—C—C—C torsion angles of −58.2 (3) and −66.2 (3)° in molecules A and B, respectively. In the crystal, no intermolecular hydrogen bonds are observed. The crystal packing features short S⋯S contacts [3.4792 (9) Å] and π–π interactions [3.661 (3), 3.664 (11) and 3.5727 (10) Å], producing a three-dimensional network. International Union of Crystallography 2015-02-13 /pmc/articles/PMC4350721/ /pubmed/25844234 http://dx.doi.org/10.1107/S2056989015002273 Text en © Al-Omary et al. 2015 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited. |
spellingShingle | Data Reports Al-Omary, Fatmah A. M. El-Emam, Ali A. Ghabbour, Hazem A. Chidan Kumar, C. S. Quah, Ching Kheng Fun, Hoong-Kun Crystal structure of 3-[(4-benzylpiperazin-1-yl)methyl]-5-(thiophen-2-yl)-2,3-dihydro-1,3,4-oxadiazole-2-thione |
title | Crystal structure of 3-[(4-benzylpiperazin-1-yl)methyl]-5-(thiophen-2-yl)-2,3-dihydro-1,3,4-oxadiazole-2-thione |
title_full | Crystal structure of 3-[(4-benzylpiperazin-1-yl)methyl]-5-(thiophen-2-yl)-2,3-dihydro-1,3,4-oxadiazole-2-thione |
title_fullStr | Crystal structure of 3-[(4-benzylpiperazin-1-yl)methyl]-5-(thiophen-2-yl)-2,3-dihydro-1,3,4-oxadiazole-2-thione |
title_full_unstemmed | Crystal structure of 3-[(4-benzylpiperazin-1-yl)methyl]-5-(thiophen-2-yl)-2,3-dihydro-1,3,4-oxadiazole-2-thione |
title_short | Crystal structure of 3-[(4-benzylpiperazin-1-yl)methyl]-5-(thiophen-2-yl)-2,3-dihydro-1,3,4-oxadiazole-2-thione |
title_sort | crystal structure of 3-[(4-benzylpiperazin-1-yl)methyl]-5-(thiophen-2-yl)-2,3-dihydro-1,3,4-oxadiazole-2-thione |
topic | Data Reports |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4350721/ https://www.ncbi.nlm.nih.gov/pubmed/25844234 http://dx.doi.org/10.1107/S2056989015002273 |
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