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Promoting convergence: The Phi spiral in abduction of mouse corneal behaviors
Why do mouse corneal epithelial cells display spiraling patterns? We want to provide an explanation for this curious phenomenon by applying an idealized problem solving process. Specifically, we applied complementary line-fitting methods to measure transgenic epithelial reporter expression arrangeme...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BlackWell Publishing Ltd
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4351477/ https://www.ncbi.nlm.nih.gov/pubmed/25755620 http://dx.doi.org/10.1002/cplx.21562 |
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author | Rhee, Jerry Nejad, Talisa Mohammad Comets, Olivier Flannery, Sean Gulsoy, Eine Begum Iannaccone, Philip Foster, Craig |
author_facet | Rhee, Jerry Nejad, Talisa Mohammad Comets, Olivier Flannery, Sean Gulsoy, Eine Begum Iannaccone, Philip Foster, Craig |
author_sort | Rhee, Jerry |
collection | PubMed |
description | Why do mouse corneal epithelial cells display spiraling patterns? We want to provide an explanation for this curious phenomenon by applying an idealized problem solving process. Specifically, we applied complementary line-fitting methods to measure transgenic epithelial reporter expression arrangements displayed on three mature, live enucleated globes to clarify the problem. Two prominent logarithmic curves were discovered, one of which displayed the ϕ ratio, an indicator of an optimal configuration in phyllotactic systems. We then utilized two different computational approaches to expose our current understanding of the behavior. In one procedure, which involved an isotropic mechanics-based finite element method, we successfully produced logarithmic spiral curves of maximum shear strain based pathlines but computed dimensions displayed pitch angles of 35° (ϕ spiral is ∼17°), which was altered when we fitted the model with published measurements of coarse collagen orientations. We then used model-based reasoning in context of Peircean abduction to select a working hypothesis. Our work serves as a concise example of applying a scientific habit of mind and illustrates nuances of executing a common method to doing integrative science. © 2014 Wiley Periodicals, Inc. Complexity 20: 22–38, 2015 |
format | Online Article Text |
id | pubmed-4351477 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | BlackWell Publishing Ltd |
record_format | MEDLINE/PubMed |
spelling | pubmed-43514772015-03-18 Promoting convergence: The Phi spiral in abduction of mouse corneal behaviors Rhee, Jerry Nejad, Talisa Mohammad Comets, Olivier Flannery, Sean Gulsoy, Eine Begum Iannaccone, Philip Foster, Craig Complexity Research Articles Why do mouse corneal epithelial cells display spiraling patterns? We want to provide an explanation for this curious phenomenon by applying an idealized problem solving process. Specifically, we applied complementary line-fitting methods to measure transgenic epithelial reporter expression arrangements displayed on three mature, live enucleated globes to clarify the problem. Two prominent logarithmic curves were discovered, one of which displayed the ϕ ratio, an indicator of an optimal configuration in phyllotactic systems. We then utilized two different computational approaches to expose our current understanding of the behavior. In one procedure, which involved an isotropic mechanics-based finite element method, we successfully produced logarithmic spiral curves of maximum shear strain based pathlines but computed dimensions displayed pitch angles of 35° (ϕ spiral is ∼17°), which was altered when we fitted the model with published measurements of coarse collagen orientations. We then used model-based reasoning in context of Peircean abduction to select a working hypothesis. Our work serves as a concise example of applying a scientific habit of mind and illustrates nuances of executing a common method to doing integrative science. © 2014 Wiley Periodicals, Inc. Complexity 20: 22–38, 2015 BlackWell Publishing Ltd 2015 2014-06-26 /pmc/articles/PMC4351477/ /pubmed/25755620 http://dx.doi.org/10.1002/cplx.21562 Text en © 2014 The Authors. Complexity Published by Wiley Periodicals, Inc. http://creativecommons.org/licenses/by-nc-nd/3.0/ This is an open access article under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non-commercial and no modifications or adaptations are made. |
spellingShingle | Research Articles Rhee, Jerry Nejad, Talisa Mohammad Comets, Olivier Flannery, Sean Gulsoy, Eine Begum Iannaccone, Philip Foster, Craig Promoting convergence: The Phi spiral in abduction of mouse corneal behaviors |
title | Promoting convergence: The Phi spiral in abduction of mouse corneal
behaviors |
title_full | Promoting convergence: The Phi spiral in abduction of mouse corneal
behaviors |
title_fullStr | Promoting convergence: The Phi spiral in abduction of mouse corneal
behaviors |
title_full_unstemmed | Promoting convergence: The Phi spiral in abduction of mouse corneal
behaviors |
title_short | Promoting convergence: The Phi spiral in abduction of mouse corneal
behaviors |
title_sort | promoting convergence: the phi spiral in abduction of mouse corneal
behaviors |
topic | Research Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4351477/ https://www.ncbi.nlm.nih.gov/pubmed/25755620 http://dx.doi.org/10.1002/cplx.21562 |
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